Pairwise Alignments

Query, 320 a.a., integron integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., tyrosine recombinase XerD from Pseudomonas simiae WCS417

 Score =  103 bits (257), Expect = 5e-27
 Identities = 84/266 (31%), Positives = 127/266 (47%), Gaps = 48/266 (18%)

Query: 51  EEFLTYLAVQGKVATKTQSLA--LNSLSFLYKEILKTPLSL---EIRFQRSQLERKLPVV 105
           E  L +LA + +   K +S A  L+ +   Y+ +L+  L      ++    QL R LP  
Sbjct: 54  ELILDHLAWRLEQNYKPRSTARFLSGVRGFYRYLLREKLIAVDPTLQVDMPQLGRPLPKS 113

Query: 106 LTRDEIRRLL------EIVDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQG 159
           L+  ++  LL      E +  + +  +++LY  GLR+ E + L ++ ++   G +R+  G
Sbjct: 114 LSEADVEALLAAPDLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRV-MG 172

Query: 160 KGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRW 219
           KG K R V + +E        I   +RY  RD   +  GG              P +   
Sbjct: 173 KGSKERLVPMGEEA-------IVWVERYM-RDARSELLGG-------------RPSDV-- 209

Query: 220 HYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLE 279
             LFPS           +R   M        ++  A+ AGI K ++ HTLRH+FATHLL 
Sbjct: 210 --LFPS-----------LRGEQMTRQTFWHRIKHQAKVAGIGKALSPHTLRHAFATHLLN 256

Query: 280 VGADIRTVQEQLGHTDVKTTQIYTHV 305
            GAD+R VQ  LGH+D+ TTQIYTHV
Sbjct: 257 HGADLRVVQMLLGHSDLSTTQIYTHV 282