Pairwise Alignments

Query, 320 a.a., integron integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

 Score = 99.0 bits (245), Expect = 1e-25
 Identities = 84/315 (26%), Positives = 148/315 (46%), Gaps = 58/315 (18%)

Query: 9   VREFMQTRYY----AKKTIEAYLHWITRYIHF--HNKKHPSLMGDKEVEEFLTYLAVQG- 61
           V +F+ T ++    A+ T+ +Y + +++ + +   N+     +    ++E+ ++L+ Q  
Sbjct: 12  VEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQSWLSEQNY 71

Query: 62  KVATKTQSLAL--NSLSFLYKEILKT--PLSLEIRFQRSQLERKLPVVLTRDEIRRLLEI 117
           K  +K + L+       +L++E ++   P +L +     +L  +LP  L+  ++  LL  
Sbjct: 72  KPTSKARMLSAIRRLFQYLHREKVRADDPSALLVS---PKLPTRLPKDLSEAQVEALLSA 128

Query: 118 VDPKHQLPIK------LLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAK 171
            DP+  L ++      LLY +GLR+ E + L ++++    G +R+  GKGGK R V + +
Sbjct: 129 PDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRV-MGKGGKERLVPMGE 187

Query: 172 ELYPHLKEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLD 231
                                        W+ T L++       E     +FPS      
Sbjct: 188 NAIE-------------------------WIETFLQQGRSLLLGEQTSDIVFPS------ 216

Query: 232 PESDVMRRHHMNETVLQKAVRRSAQEAGIE-KTVTCHTLRHSFATHLLEVGADIRTVQEQ 290
                 R   M        ++  A  AGI+ + ++ H LRH+FATHLL  GAD+R VQ  
Sbjct: 217 -----SRGQQMTRQTFWHRIKHYAVIAGIDVEKLSPHVLRHAFATHLLNYGADLRVVQML 271

Query: 291 LGHTDVKTTQIYTHV 305
           LGH+D+ TTQIYTHV
Sbjct: 272 LGHSDLSTTQIYTHV 286