Pairwise Alignments

Query, 320 a.a., integron integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 337 a.a., Integron integrase IntI1 from Sphingobium sp. HT1-2

 Score =  280 bits (717), Expect = 3e-80
 Identities = 143/312 (45%), Positives = 208/312 (66%), Gaps = 1/312 (0%)

Query: 9   VREFMQTRYYAKKTIEAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQGKVATKTQ 68
           +RE ++  +Y+ +T +AY+HW+  +I FH  +HP+ +G  EVE FL++LA + KV+  T 
Sbjct: 20  LRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVSVSTH 79

Query: 69  SLALNSLSFLYKEILKTPLSLEIRFQRSQLERKLPVVLTRDEIRRLLEIVDPKHQLPIKL 128
             AL +L F Y ++L T L       R +  R+LPVVLT DE+ R+L  ++ +H+L  +L
Sbjct: 80  RQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILGFLEGEHRLFAQL 139

Query: 129 LYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYY 188
           LYG+G+R+ E ++LRV+D+DFD+G I + +GKG K+R + L + L P L+EQ++ A+ ++
Sbjct: 140 LYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWW 199

Query: 189 DRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQ 248
            +D   +   GV LP AL+ KYP A + + W ++F     S DP S V+RRHHM +   Q
Sbjct: 200 LKD-QAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQ 258

Query: 249 KAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDR 308
           +A +R+ ++AGI K  T HTLRHSFAT LL  G DIRTVQ+ LGH+DV TT IYTHVL  
Sbjct: 259 RAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVLKV 318

Query: 309 GASGVLSPLSRL 320
           G +GV SPL  L
Sbjct: 319 GGAGVRSPLDAL 330