Pairwise Alignments

Query, 320 a.a., integron integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., Tyrosine recombinase XerD from Pseudomonas putida KT2440

 Score = 99.8 bits (247), Expect = 7e-26
 Identities = 82/278 (29%), Positives = 128/278 (46%), Gaps = 48/278 (17%)

Query: 39  KKHPSLMGDKEVEEFLTYLAVQGKVATKTQSLA--LNSLSFLYKEILKTPLSL---EIRF 93
           ++H   + D   +  L +LA +     K +S A  L+ L   ++ +L+  L      ++ 
Sbjct: 42  QEHSVSLPDAGRDLILDHLAWRLDQGYKPRSTARFLSGLRGFFRYLLREKLVAIDPTLQV 101

Query: 94  QRSQLERKLPVVLTRDEIRRLL------EIVDPKHQLPIKLLYGSGLRLMECMRLRVQDI 147
              QL + LP  L+  ++  LL      E +  + +  +++LY  GLR+ E + L +  +
Sbjct: 102 DMPQLGKPLPKSLSEADVEALLQAPDLGEAIGQRDRAMLEVLYACGLRVTELVSLTLDQV 161

Query: 148 DFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQKNYGGVWLPTALK 207
           +   G +R+  GKG K R V + +E    L+         Y RD   +   G        
Sbjct: 162 NLRQGVLRV-MGKGSKERLVPMGEEAVVWLER--------YQRDGRAELLNG-------- 204

Query: 208 EKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRSAQEAGIEKTVTCH 267
                 P +     LFPS            R   M        ++  A+ AGI+K ++ H
Sbjct: 205 -----RPSDV----LFPS-----------QRGEQMTRQTFWHRIKHHARVAGIDKPLSPH 244

Query: 268 TLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305
           TLRH+FATHLL  GAD+R VQ  LGH+D+ TTQIYTHV
Sbjct: 245 TLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHV 282