Pairwise Alignments

Query, 320 a.a., integron integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 299 a.a., site-specific tyrosine recombinase XerD from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  108 bits (271), Expect = 1e-28
 Identities = 87/303 (28%), Positives = 146/303 (48%), Gaps = 51/303 (16%)

Query: 19  AKKTIEAYLHWITRYIHFHNKKH----PSLMGDKEVEEFLTYLAVQGKVATKTQSLALNS 74
           ++ ++EAY   + + + F + K     P  M    + +FL ++   G +   +Q+  L+ 
Sbjct: 21  SRHSVEAYERDVRKLVDFMDAKGLQVAPEDMKPAILRDFLEWINELG-MTPHSQARTLSG 79

Query: 75  LSFLYKEILKTPLSLEI---RFQRSQLERKLPVVLTRDEIRRLLEIVD------PKHQLP 125
           +   YK ++   +         +  +L+RKLP  L   EI +LL  +D       +++  
Sbjct: 80  IRAFYKFLIMEDMMQTDPTDTIEAPKLDRKLPDTLAFHEIEQLLSAIDLSTPEGTRNRAM 139

Query: 126 IKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAK 185
           ++ LY SGLR+ E + LR+ ++  D G ++I  GKG K R V + ++   H++       
Sbjct: 140 LETLYSSGLRVSELLDLRISNLYADAGFLKI-SGKGEKERLVPIGRDALKHIQ------- 191

Query: 186 RYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNET 245
            Y D         G+     +K+   +  +  R                   R   M+  
Sbjct: 192 LYRD---------GIRCHLNIKKGNEDILFLNR-------------------RGAKMSRV 223

Query: 246 VLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305
           ++   ++    +AGI+KTV+ HT RHSFATHL+E GAD+R VQE LGH  + TT+IYTH 
Sbjct: 224 MVFTIIKDLTAKAGIQKTVSPHTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTH- 282

Query: 306 LDR 308
           LDR
Sbjct: 283 LDR 285