Pairwise Alignments

Query, 320 a.a., integron integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 308 a.a., site-specific tyrosine recombinase XerD from Magnetospirillum magneticum AMB-1

 Score = 89.4 bits (220), Expect = 1e-22
 Identities = 93/315 (29%), Positives = 146/315 (46%), Gaps = 53/315 (16%)

Query: 8   SVREFMQT-RYYAKKTIEAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQGKV--A 64
           S  E MQ  R  +  T++AY   +  +  F + +  S +   +      Y+A Q ++  A
Sbjct: 11  SFLEMMQVERGASPNTLDAYGRDLADFAEFLDGRGFSPLR-ADARAVAAYIARQAEIGMA 69

Query: 65  TKTQSLALNSLS----FLYKEILKTPLSLEIRFQRSQLERKLPVVLTRDEIRRLLEIVDP 120
            +TQ+  L+ L     F++ E L+ P          +L R LP  L R+E+  LL+    
Sbjct: 70  ARTQARRLSCLKQFYGFVFAERLR-PDDPTANIDAPRLGRPLPKYLRREEVTALLDAARA 128

Query: 121 KHQLP-------IKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKEL 173
                       ++ LY +GLR+ E + L +  +  D  ++ + +GKG K R V L+   
Sbjct: 129 LEGSDGILMTALLETLYAAGLRVSELVSLPLSAVARD-PSVLVVRGKGSKERMVPLSDPA 187

Query: 174 YPHLKEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPE 233
                 + AL     +R             T + +  P+     RW  LFPS        
Sbjct: 188 ------RAALLAWKVERQ------------TLVPKSKPS-----RW--LFPS-------- 214

Query: 234 SDVMRRHHMNETVLQKAVRRSAQEAGIEKT-VTCHTLRHSFATHLLEVGADIRTVQEQLG 292
           S  +   H+  +   K + R A  AG++   V+ H LRHSFA+HLL  GAD+R+VQE LG
Sbjct: 215 SGALG--HLTRSGFAKMLGRVAVLAGLDPAKVSPHVLRHSFASHLLAGGADLRSVQEMLG 272

Query: 293 HTDVKTTQIYTHVLD 307
           H D+ TT+IYTH++D
Sbjct: 273 HADIATTEIYTHLID 287