Pairwise Alignments

Query, 320 a.a., integron integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., Tyrosine recombinase XerD from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 99.0 bits (245), Expect = 1e-25
 Identities = 92/319 (28%), Positives = 139/319 (43%), Gaps = 56/319 (17%)

Query: 4   QFLLSVREFMQT----RYYAKKTIEAY---LHWITRYIHFHNKKHPSLMGDKEVEEFLTY 56
           Q L  + +F+      R  A+ T+ AY   L  +  ++H   K   +   D +++  L  
Sbjct: 3   QDLARIEQFLDALWLERNLAENTLSAYRRDLSMVVAWLHHRGKTLATAQAD-DLQTLLAE 61

Query: 57  LAVQGKVATKTQSLALNSLSF---LYKEILKTPLSLEIRFQRSQLERKLPVVLTRDEIRR 113
               G  AT +  L      F   LY+E  +       +    +L ++LP  L+  ++ R
Sbjct: 62  RVEGGYKATSSARLLSAMRRFFQHLYREKYRED-DPSAQLASPKLPQRLPKDLSEAQVER 120

Query: 114 LLE--IVDPKHQLP----IKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTV 167
           LL+  ++D   +L     +++LY +GLR+ E + L + DI    G +R+  GKG K R V
Sbjct: 121 LLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVI-GKGNKERLV 179

Query: 168 TLAKELYPHLKEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQ 227
            L +E                            WL T L+   P          LFPS  
Sbjct: 180 PLGEEAV-------------------------YWLETYLEHGRPWLLNGVSIDVLFPS-- 212

Query: 228 LSLDPESDVMRRHHMNETVLQKAVRRSAQEAGIE-KTVTCHTLRHSFATHLLEVGADIRT 286
                     R   M        ++  A  AGI+ + ++ H LRH+FATHLL  GAD+R 
Sbjct: 213 ---------QRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRV 263

Query: 287 VQEQLGHTDVKTTQIYTHV 305
           VQ  LGH+D+ TTQIYTHV
Sbjct: 264 VQMLLGHSDLSTTQIYTHV 282