Pairwise Alignments

Query, 320 a.a., integron integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 369 a.a., Site-specific recombinase XerD from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  137 bits (345), Expect = 4e-37
 Identities = 92/312 (29%), Positives = 153/312 (49%), Gaps = 44/312 (14%)

Query: 10  REFMQTRYYAKKTIEAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQGKVATKTQS 69
           +++M+ + Y++ T+  Y   +  +  F   K  S + ++++E+F     +  + +   QS
Sbjct: 101 QDWMKNKRYSESTVMTYRGSLEIFFRFLENKPLSEIKNEDLEKFTKDFIIDRQYSVSYQS 160

Query: 70  LALNSLSFLYKEILKTPLSLEIRFQRSQLERKLPVVLTRDEIRRLLEI-VDPKHQLPIKL 128
             +N++   +       L  E+   R +   KLP VL+++E++R+LE   + KH+  + +
Sbjct: 161 QVINAIKLFFNIKQNRKLDPEV-VSRPRKPSKLPNVLSKEEVKRILEAHKNIKHRTMLSI 219

Query: 129 LYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYY 188
           +Y  GLR  E + L++ D+D   G + + Q KG K+R V L+        + IAL + YY
Sbjct: 220 IYACGLRRSEVLHLKISDVDSKRGLLIVRQSKGKKDRVVPLS-------DKTIALLREYY 272

Query: 189 DRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQ 248
                                     YE   ++LF   +L+    S            LQ
Sbjct: 273 -------------------------KYERPQYFLFXGKKLNSKYSSG----------SLQ 297

Query: 249 KAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDR 308
           K ++ +  ++GI+K VT H LRHSFATHLLE G D+R +QE LGH   +TT+IYTHV D 
Sbjct: 298 KILKSALGKSGIKKPVTLHWLRHSFATHLLENGTDLRYIQEILGHNSSRTTEIYTHVTDN 357

Query: 309 GASGVLSPLSRL 320
               + SP   L
Sbjct: 358 SIRKIKSPFDDL 369