Pairwise Alignments

Query, 320 a.a., integron integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 301 a.a., tyrosine recombinase XerD from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  105 bits (263), Expect = 1e-27
 Identities = 91/306 (29%), Positives = 145/306 (47%), Gaps = 51/306 (16%)

Query: 16  RYYAKKTIEAYLHWITRYIHFHNKKHPSLMGD----KEVEEFLTYLAVQGKVATKTQSLA 71
           R  +K +I AY   + +   F     P +         +  F++ LA  G ++  TQ+  
Sbjct: 20  RSLSKNSISAYRRDMEKLSAFMKDAFPGITPLTTQLNHLRAFVSELASLG-ISEYTQARV 78

Query: 72  LNSLSFLYKEIL---KTPLSLEIRFQRSQLERKLPVVLTRDEIRRLLEIVD------PKH 122
           ++ +   +K ++   K      I  +  +L RKLP  L+ +EI +LLE +        ++
Sbjct: 79  ISGVKAFFKFMVYEDKLEEDPAILLEAPKLGRKLPDTLSYEEIVKLLEGIKLGTPEGHRN 138

Query: 123 QLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIA 182
           +  +++LY SGLR+ E + L++  +  D G +RI  GKG K R V + K+   +LK  + 
Sbjct: 139 RAMLEVLYSSGLRVSELVELKLGMVYSDIGFLRIL-GKGNKERLVPVGKDALRYLKLYLD 197

Query: 183 LAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHM 242
             +       HQK   G                     Y+F +            R   M
Sbjct: 198 EVRN------HQKIAPG------------------HEEYVFLN-----------RRGKKM 222

Query: 243 NETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIY 302
              ++   +++  +E GI+K V+ HT RHSFATHL+E GAD+R VQE LGH  + TT+IY
Sbjct: 223 TRVMVFIFIKKLVEEVGIKKKVSPHTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIY 282

Query: 303 THVLDR 308
           TH LDR
Sbjct: 283 TH-LDR 287