Pairwise Alignments

Query, 320 a.a., integron integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 331 a.a., site-specific tyrosine recombinase XerD from Agrobacterium fabrum C58

 Score = 97.8 bits (242), Expect = 3e-25
 Identities = 97/311 (31%), Positives = 155/311 (49%), Gaps = 50/311 (16%)

Query: 19  AKKTIEAYLHWITRYIHFHNKKHPSLMGDK--EVEEFLTYLAVQGKVATKTQSLALNSLS 76
           A  T+ +Y H +     F  ++  SL   +  ++  +LT+LA QG  AT +Q+  L+S+ 
Sbjct: 28  AANTLSSYEHDLADLREFLGRRGQSLTEAQTPDLSAYLTHLAAQGFAAT-SQARRLSSMR 86

Query: 77  ----FLYKEILK--TPLSLEIRFQRSQLERKLPVVLTRDEIRRLL-------------EI 117
               FLY E L+   P  + I   R  L   LP  ++  ++ RLL             ++
Sbjct: 87  QFYRFLYSEGLRGDDPTGI-IDAPRKGLA--LPKTMSVADVNRLLGLAAQEAATEGPGQL 143

Query: 118 VDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHL 177
              +  L ++LLY +G+R+ E + L V+ +  + G   + +GKG K+R V L++     +
Sbjct: 144 ARIRMHLLLELLYATGMRVSELVSLPVKVLRQE-GRFLMIRGKGNKDRMVLLSRAAIEAM 202

Query: 178 KEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVM 237
           ++  A  K      L Q+         A ++K   A  E  W  LFPS            
Sbjct: 203 EKYEAGRKA-----LSQEKSKAA----ASQKKTDTA--ESPW--LFPSNS---------- 239

Query: 238 RRHHMNETVLQKAVRRSAQEAGIEKT-VTCHTLRHSFATHLLEVGADIRTVQEQLGHTDV 296
           +  H+   V  + ++  A  AG+  + V+ H LRH+FA+HLL+ GAD+R VQE LGH+D+
Sbjct: 240 KEGHLPRQVFARDLKDIAIRAGLTASAVSPHVLRHAFASHLLQNGADLRAVQELLGHSDI 299

Query: 297 KTTQIYTHVLD 307
            TTQIYTHVL+
Sbjct: 300 STTQIYTHVLE 310