Pairwise Alignments

Query, 320 a.a., integron integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 306 a.a., Tyrosine recombinase XerD from Acinetobacter radioresistens SK82

 Score =  109 bits (272), Expect = 1e-28
 Identities = 94/310 (30%), Positives = 145/310 (46%), Gaps = 48/310 (15%)

Query: 5   FLLSVREFMQTRYYAKKTIEAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQGKVA 64
           FL   R+F+  +  +  T  AYL  + +   +       L   +++ + L  L  QGK +
Sbjct: 20  FLQGFRDFLIAQTVSPHTRNAYLSDLIQCSEYCPSTPLPLWNSEDIADVLFELTKQGK-S 78

Query: 65  TKTQSLALNSLSFLYKEILKTPLSLE---IRFQRSQLERKLPVVLTRDEIRRLLEIVDPK 121
            ++ +  L++L   +K + +  L  +      +  +L R LP  L+  ++  LL   D  
Sbjct: 79  PRSIARTLSALRSFFKFMREQQLRSDNPVATHKTPKLGRALPKDLSELDVEHLLHAPDIN 138

Query: 122 HQLPIK------LLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYP 175
             L ++      +LY  GLR+ E + LR++ I+   G +RI  GKG K R V L      
Sbjct: 139 TALGLRDRAMLEVLYACGLRVTELLNLRLELINLKQGYLRI-TGKGNKERLVPLG----- 192

Query: 176 HLKEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESD 235
               Q+A+                 W+   L E  P   Y+    YLF      L     
Sbjct: 193 ----QVAIE----------------WVEKYLNEARPQL-YKSATDYLF------LTQHGG 225

Query: 236 VMRRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTD 295
           +M R +        A++R A +AGI+  ++ HTLRH+FATHLL  GAD+R VQ  LGH+D
Sbjct: 226 IMSRQNF-----WYAIKRYALQAGIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSD 280

Query: 296 VKTTQIYTHV 305
           + TTQIYTHV
Sbjct: 281 LSTTQIYTHV 290