Pairwise Alignments

Query, 326 a.a., IS5 family transposase ISVch5 from Vibrio cholerae E7946 ATCC 55056

Subject, 325 a.a., Mobile element protein from Variovorax sp. SCN45

 Score =  364 bits (934), Expect = e-105
 Identities = 183/309 (59%), Positives = 229/309 (74%), Gaps = 5/309 (1%)

Query: 4   QLTFADGEFSNKRRQTRKELFLARMEKLLPWSQLLAVIEPFYPKAGNGRRPYPLETMFRI 63
           Q++FAD E + KR++TR+E+FL  ME ++PW  LL VIEP YP AG GRRPY L+ M R+
Sbjct: 3   QISFADAEQAGKRKKTRREVFLGEMELVVPWKVLLKVIEPHYPVAGRGRRPYSLQAMLRV 62

Query: 64  HCMQQWYSLSDEAMEDALYEIASMRLFAHLSLDRAIPDRTTIMNFRHLLEQHQLGRSVFE 123
           H MQ W++LSD AME+ALYEIAS+R FA L L+ AIPD TTI+NFRHLLE + L   +F 
Sbjct: 63  HLMQNWFALSDPAMEEALYEIASLRTFAGLGLE-AIPDETTILNFRHLLEANDLAEDIFN 121

Query: 124 PINQWLSERGVLMKQGTLVDATIIEAPSSTKNKTNQRDPEMHQTKKGNEWHFGMKAHIGV 183
            +N  L+ +G+L+K+G++VDATII APSSTKN T +RDPEMHQTKKGN+WHFGMKAHIGV
Sbjct: 122 QVNAHLARKGLLLKRGSIVDATIIAAPSSTKNSTGERDPEMHQTKKGNQWHFGMKAHIGV 181

Query: 184 DAKSGLTHTLVTTAANEHDLNQLSNLLHGDEEFVSGDAGYQGAHKRDELKGADVDWLIAE 243
           DA SGL HT+ TTAANE D+ Q+S+LLHG E+ V  D+GY+GA  R +    +V W IA 
Sbjct: 182 DADSGLVHTVTTTAANEADVEQVSDLLHGKEDAVWADSGYRGAQSRVK---RNVQWHIAG 238

Query: 244 RPGKVRALKKHPRKNKVAIHIEYLKASIRAKVEHPFRIIKCQFGFIKARYKGLMKNDNQL 303
           RP  +  + +   K + A   EY KASIRAKVEHPFR+IK QFG  K R+KGL KN   +
Sbjct: 239 RPSDIAKVTQSRAKAR-ARKQEYQKASIRAKVEHPFRVIKRQFGLAKVRFKGLAKNTAHV 297

Query: 304 AMLFTLANL 312
             LF L+NL
Sbjct: 298 ITLFALSNL 306