Pairwise Alignments

Query, 326 a.a., IS5 family transposase ISVch5 from Vibrio cholerae E7946 ATCC 55056

Subject, 327 a.a., transposase, IS4 family from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score =  350 bits (897), Expect = e-101
 Identities = 174/315 (55%), Positives = 224/315 (71%), Gaps = 7/315 (2%)

Query: 1   MSHQLTFADGEFSNKRRQTRKELFLARMEKLLPWSQLLAVIEPFYPKAGNGRRPYPLETM 60
           M  Q+TFAD E++ KR++TRKELFL  M++++PW  L+A+IEP+YPK   GR  YPL  M
Sbjct: 1   MMKQMTFADAEYAGKRKRTRKELFLIEMDQVVPWKGLIALIEPYYPKGEGGRPAYPLMAM 60

Query: 61  FRIHCMQQWYSLSDEAMEDALYEIASMRLFAHLSLDRAIPDRTTIMNFRHLLEQHQLGRS 120
            R+H MQ W+  SD AME+ALYE   +R F+ LSL+R IPD TTI+NFR LLE+H+L   
Sbjct: 61  LRVHLMQNWFGYSDPAMEEALYETTILRQFSGLSLER-IPDETTILNFRRLLEKHELATG 119

Query: 121 VFEPINQWLSERGVLMKQGTLVDATIIEAPSSTKNKTNQRDPEMHQTKKGNEWHFGMKAH 180
           +   IN +L +RG+ ++QGT+VDAT+I APSSTKNK  +RDPEMHQTKKGN+++FG KAH
Sbjct: 120 ILGVINGYLGDRGLSLRQGTIVDATLIHAPSSTKNKDGKRDPEMHQTKKGNQYYFGAKAH 179

Query: 181 IGVDAKSGLTHTLVTTAANEHDLNQLSNLLHGDEEFVSGDAGYQGAHKRDELKGADVDWL 240
           IG D +SGL H++V TAAN  D+ Q++ LLHG+E  V  DAGY G  KR+E  G  V W 
Sbjct: 180 IGADDESGLVHSVVVTAANVADVTQVAKLLHGEENVVCADAGYTGVEKREEHTGRKVIWQ 239

Query: 241 IAERPGKVRALKKHPRKN---KVAIHIEYLKASIRAKVEHPFRIIKCQFGFIKARYKGLM 297
           IA R       KKH ++N   K    IE  KA +RAKVEHPFR+IK QFG+ K R++GL 
Sbjct: 240 IAARRS---TYKKHGKRNVLYKAIRKIEKAKAQVRAKVEHPFRVIKRQFGYEKVRFRGLA 296

Query: 298 KNDNQLAMLFTLANL 312
           KN  Q+  LF L+NL
Sbjct: 297 KNTAQMVTLFALSNL 311