Pairwise Alignments

Query, 326 a.a., IS5 family transposase ISVch5 from Vibrio cholerae E7946 ATCC 55056

Subject, 345 a.a., transposase from Pseudomonas putida KT2440

 Score = 98.2 bits (243), Expect = 3e-25
 Identities = 85/315 (26%), Positives = 138/315 (43%), Gaps = 32/315 (10%)

Query: 25  LARMEKLLPWSQLLAVIEPFYPKAGN---GRRPYPLETMFRIHCMQQWYSLSDEAMEDAL 81
           LA++E  + ++ L A ++   P+  +   GR PYP ETM RI  +++ Y+LSDE ME  L
Sbjct: 28  LAQIESYIDFAALAAEVDRVAPRPVSPQGGRPPYPTETMVRILVLKRLYNLSDEQMEYQL 87

Query: 82  YEIASMRLFAHLSLDRAIPDRTTIMNFRHLLEQHQLGRSVFEPINQWLSERGVLMKQGTL 141
            +  S + F  L+    IPDRTT+  F + +      + +F+ +   L   G + + G +
Sbjct: 88  LDRMSYKRFCGLASAVNIPDRTTVWTFENRIGDAG-AKVLFDGVTAQLLRHGFIARGGQI 146

Query: 142 VDATIIEAPSSTKN-------------------KTNQRDPEMHQTKKGNEWHFGMKAHIG 182
           VDAT++ AP    +                   K  Q+D +   T+K  + HFG K  + 
Sbjct: 147 VDATLVPAPKQRNSREENKLVREGAMPANWKPAKRRQKDTDATWTQKHGKNHFGYKLSVN 206

Query: 183 VDAKSGLTHTLVTTAANEHDLNQLSNLL--HGDEEFVSGDAGYQGAHKRDELKGADVDWL 240
           VD K  +     T  A+ HD      L+        V  D G+  A +   LK       
Sbjct: 207 VDKKYKIIRKFETDTASVHDSKHFDALIDRSNTSRDVYADRGHTSADREGWLKDHGYRNQ 266

Query: 241 IAERPGKVRALKKHPRKNKVAIHIEYLKASIRAKVEHPFRIIKCQFGFIKARYKGLMKND 300
           I  +  + + L +  ++    I      A  RA+VEH F  I+ Q G    R  G  + +
Sbjct: 267 IQRKGYRNKPLSECQQRRNHRI------AKTRARVEHVFASIE-QMGGKLIRTIGQGRAN 319

Query: 301 NQLAMLFTLANLVKV 315
             + M+    NL ++
Sbjct: 320 FAMTMMAACYNLKRL 334