Pairwise Alignments

Query, 326 a.a., IS5 family transposase ISVch5 from Vibrio cholerae E7946 ATCC 55056

Subject, 300 a.a., Mobile element protein from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  317 bits (813), Expect = 2e-91
 Identities = 162/297 (54%), Positives = 205/297 (69%), Gaps = 3/297 (1%)

Query: 28  MEKLLPWSQLLAVIEPFYP---KAGNGRRPYPLETMFRIHCMQQWYSLSDEAMEDALYEI 84
           M K++PW  L+A+I+P      +A  GR P+ +ETM RIHC+Q W++LSD AME  L+E 
Sbjct: 1   MNKIVPWQALVALIQPHARGAHQALGGRPPFAVETMLRIHCLQLWWNLSDPAMEAELHER 60

Query: 85  ASMRLFAHLSLDRAIPDRTTIMNFRHLLEQHQLGRSVFEPINQWLSERGVLMKQGTLVDA 144
              R F  L     +PD +TI+ FRHLLE+HQL   V   IN  L+ +G+L+K GT+VDA
Sbjct: 61  PLYRRFVGLDGAARLPDESTILRFRHLLEKHQLAPQVLATINAGLAHQGLLLKTGTVVDA 120

Query: 145 TIIEAPSSTKNKTNQRDPEMHQTKKGNEWHFGMKAHIGVDAKSGLTHTLVTTAANEHDLN 204
           TII APSSTKN T +RDPEMHQTKKGN+WHFGMKAHIGVDA SGL H++V TAAN +D+ 
Sbjct: 121 TIIAAPSSTKNSTGERDPEMHQTKKGNQWHFGMKAHIGVDADSGLVHSVVGTAANVNDVT 180

Query: 205 QLSNLLHGDEEFVSGDAGYQGAHKRDELKGADVDWLIAERPGKVRALKKHPRKNKVAIHI 264
           Q   L+HG+E  V  DAGYQG  KR+E +G + +W +A RPGK + L K     ++   +
Sbjct: 181 QAGALVHGEETDVFADAGYQGVAKREETQGINANWHVAMRPGKRKVLDKSTPMGEIMDKL 240

Query: 265 EYLKASIRAKVEHPFRIIKCQFGFIKARYKGLMKNDNQLAMLFTLANLVKVDQLIRR 321
           E  KA IRAKVEHPFR+IK QFG  K RY+GL KN  +L MLF L+NL  V + I R
Sbjct: 241 EQTKARIRAKVEHPFRVIKQQFGHAKVRYRGLAKNTARLTMLFALSNLWMVRRQILR 297