Pairwise Alignments

Query, 326 a.a., IS5 family transposase ISVch5 from Vibrio cholerae E7946 ATCC 55056

Subject, 338 a.a., CP4-6 prophage; IS5 transposase and trans-activator (NCBI) from Escherichia coli BW25113

 Score =  556 bits (1434), Expect = e-163
 Identities = 267/325 (82%), Positives = 296/325 (91%)

Query: 1   MSHQLTFADGEFSNKRRQTRKELFLARMEKLLPWSQLLAVIEPFYPKAGNGRRPYPLETM 60
           MSHQLTFAD EFS+KRRQTRKE+FL+RME++LPW  ++ VIEPFYPKAGNGRRPYPLETM
Sbjct: 13  MSHQLTFADSEFSSKRRQTRKEIFLSRMEQILPWQNMVEVIEPFYPKAGNGRRPYPLETM 72

Query: 61  FRIHCMQQWYSLSDEAMEDALYEIASMRLFAHLSLDRAIPDRTTIMNFRHLLEQHQLGRS 120
            RIHCMQ WY+LSD AMEDALYEIASMRLFA LSLD A+PDRTTIMNFRHLLEQHQL R 
Sbjct: 73  LRIHCMQHWYNLSDGAMEDALYEIASMRLFARLSLDSALPDRTTIMNFRHLLEQHQLARQ 132

Query: 121 VFEPINQWLSERGVLMKQGTLVDATIIEAPSSTKNKTNQRDPEMHQTKKGNEWHFGMKAH 180
           +F+ IN+WL+E GV+M QGTLVDATIIEAPSSTKNK  QRDPEMHQTKKGN+WHFGMKAH
Sbjct: 133 LFKTINRWLAEAGVMMTQGTLVDATIIEAPSSTKNKEQQRDPEMHQTKKGNQWHFGMKAH 192

Query: 181 IGVDAKSGLTHTLVTTAANEHDLNQLSNLLHGDEEFVSGDAGYQGAHKRDELKGADVDWL 240
           IGVDAKSGLTH+LVTTAANEHDLNQL NLLHG+E+FVS DAGYQGA +R+EL   DVDWL
Sbjct: 193 IGVDAKSGLTHSLVTTAANEHDLNQLGNLLHGEEQFVSADAGYQGAPQREELAEVDVDWL 252

Query: 241 IAERPGKVRALKKHPRKNKVAIHIEYLKASIRAKVEHPFRIIKCQFGFIKARYKGLMKND 300
           IAERPGKVR LK+HPRKNK AI+IEY+KASIRA+VEHPFRIIK QFGF+KARYKGL+KND
Sbjct: 253 IAERPGKVRTLKQHPRKNKTAINIEYMKASIRARVEHPFRIIKRQFGFVKARYKGLLKND 312

Query: 301 NQLAMLFTLANLVKVDQLIRRQARS 325
           NQLAMLFTLANL + DQ+IR+  RS
Sbjct: 313 NQLAMLFTLANLFRADQMIRQWERS 337