Pairwise Alignments

Query, 326 a.a., IS5 family transposase ISVch5 from Vibrio cholerae E7946 ATCC 55056

Subject, 345 a.a., IS5 family transposase from Agrobacterium fabrum C58

 Score =  125 bits (315), Expect = 1e-33
 Identities = 89/315 (28%), Positives = 143/315 (45%), Gaps = 31/315 (9%)

Query: 25  LARMEKLLPWSQLLAVIEPFYPKAGNGRRPYPLETMFRIHCMQQWYSLSDEAMEDALYEI 84
           L R+  ++ W +   ++       G GR  Y    MF+   +Q  Y LSD  +E+AL + 
Sbjct: 25  LERLSGVVKWYRFEKLLARLRDDQGAGRPAYKPLVMFKALLLQSLYGLSDMELEEALGDR 84

Query: 85  ASMRLFAHLSLDRAIPDRTTIMNFRHLLEQHQLGRSVFEPINQWLSERGVLMKQGTLVDA 144
            S + F  L+L+  +PD +T+  FR+LL    L   +F  +++ L   G+++++GT++DA
Sbjct: 85  LSFKRFVGLALEETVPDHSTLCRFRNLLIGKDLLEKLFGELDRQLDAAGLILRRGTMLDA 144

Query: 145 TIIEAPSSTKNKTNQRD-------PEMHQTKKGNEWH----------------FGMKAHI 181
           TIIE  ++       RD        + H+ ++    H                +G KAH+
Sbjct: 145 TIIETAAARPPSGRNRDLDEAAALADPHEQEEHGPAHDADARFVRHAGKTGSAYGYKAHV 204

Query: 182 GVDAKSGLTHTLVTTAANEHDLNQLSNLLHGDEEFVSGDAGYQGAHKRDELKGADVDWLI 241
           GVD  SGL   ++TT AN +D      L+ GDE +V  D  Y    +  ELK   +   +
Sbjct: 205 GVDEGSGLIRRIITTPANVNDTVVADMLVVGDEAYVLADGAYHTHGREKELKARGIKPRL 264

Query: 242 AERPGKVRALKKHPRKNKVAIHIEYLKASIRAKVEHPFRIIKCQFGFIKARYKGLMKNDN 301
             RP      + H   +        L +  R+ VE  F  +K + G    RY+GL K   
Sbjct: 265 MRRPN-----RHHRMLSPRLARFNLLISRRRSAVETTFATLKNRMGLDVIRYRGLAKATA 319

Query: 302 QL---AMLFTLANLV 313
           Q+   AM F +   V
Sbjct: 320 QVLLAAMAFNMRRWV 334