Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 409 a.a., integrase arm-type DNA-binding domain-containing protein from Rhodanobacter sp000427505 FW510-R12

 Score = 80.9 bits (198), Expect = 6e-20
 Identities = 100/387 (25%), Positives = 158/387 (40%), Gaps = 39/387 (10%)

Query: 3   MAITDAWLRATNGKPYSGKTEISHRFGLGVRVSPKGKITWVYRANINGKMQRIKLGEYPA 62
           MA++DA +R    KP      +    GL + V+P G   W  +    GK +R+ LG YP 
Sbjct: 1   MALSDATVR--KAKPSDKPQRLFDGGGLYLEVAPSGGKWWRLKYRFGGKEKRLSLGTYPD 58

Query: 63  MKLRDAIQARESRAELVELGFDP---RKS------TRSANDDSIITLNDLIDYWAENHAR 113
             L DA + R++  +L+  G DP   RK+       R+AN   ++    L     E  A 
Sbjct: 59  TGLADARERRDAARKLLAQGVDPGVQRKAEKAAGVDRAANSFEVVAREWLAVKKPEWTAG 118

Query: 114 DNIKQCDALLKMFHTDITPTLGNYPAKQLELIDFMPVFLKAKRRVSAKHSANLMTRFKQV 173
              K+C  L         P +G  P   + + +  P+F    ++   + +  L  +  +V
Sbjct: 119 QFAKECGRL----ENHAFPRIGALPVADIGVGEIRPLFAYLIKQGHIEQAHRLRHQLSRV 174

Query: 174 LSYAVRHGLLKYNVLTELKKADVGVPTTPKRSRQ------DEQGVKALWKAIDDISIHES 227
             +AV       +   +L+       T P R+ Q      D + V  L +AID  +    
Sbjct: 175 FRFAVATERASRDPAADLR------DTLPSRNPQNHPTITDPERVGELMRAIDGFTGTLP 228

Query: 228 NKNFLRLMLIFANRSNELRLAKKADFDL--EKRVWTVPEENNKVRK--KQGGAIRRAIPP 283
            +  L+L  ++  R  E+R+A+   FDL  E   +TVP  N K++K  K+  +    I P
Sbjct: 229 VQCALKLAPLWFCRPGEIRMAEWTHFDLDGEHPSYTVPPMNRKLKKAAKENPSTPPHIVP 288

Query: 284 LAEKI--IMEQFAIWPNHTMMFPPVNTEQDRPMSANVPVDFGSKLADRIEELGFPRTTNH 341
           L+ +   I+ +      H     P   +  R MS        + LA RI   G    T H
Sbjct: 289 LSRQALEILRELRQLTGHGRYLFPGARDPKRHMSDGA---VNAALA-RIGYKGI--ITGH 342

Query: 342 DMRRTARNIWESMGVPYHVAETMLGHK 368
             R  AR +   +G      E  L HK
Sbjct: 343 GFRHMARTLLGELGWNPEALERQLSHK 369