Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 412 a.a., Prophage integrase IntS from Xanthobacter sp. DMC5

 Score = 75.5 bits (184), Expect = 3e-18
 Identities = 66/303 (21%), Positives = 137/303 (45%), Gaps = 26/303 (8%)

Query: 5   ITDAWLRATNGKPYSGKTEISHRFGLGVRVSPKGKITWVYRANINGKMQRIKLGEYPAMK 64
           +TD  ++A   KP     ++S   GL + V+P+G   W       GK +++  G Y  + 
Sbjct: 2   LTDTAIKAA--KPKEKPYKLSDAEGLHLLVTPQGGKLWRLAYRFGGKQRQLTFGSYKYVT 59

Query: 65  LRDAIQARESRAELVELGFDP------RKSTRSANDDS------IITLNDLIDYWAENHA 112
           L +A + R     L+  G DP      RK+ + A +++      ++    +     E  A
Sbjct: 60  LAEARERRTEAKRLLASGVDPGANIKSRKAEQRAAEEAAQNTFGVVASEFIEKIRKEGRA 119

Query: 113 RDNIKQCDALLKMFHTDITPTLGNYPAKQLELIDFMPVFLKAKRRVSAKHSANLMTRFKQ 172
              +++ + LL+     I   L + P  ++   + + V    + + + + +    +   +
Sbjct: 120 PATMEKAEWLLR----TIAAPLADRPISEITAREVLDVLRHVEAKGNHEAARRARSTIGR 175

Query: 173 VLSYAVRHGLLKYNVLTELKKADVGVPTTPKRSRQDEQGVKALWKAIDDISIHE-SNKNF 231
           VL YA+     + +V ++LK A +  P   + +  +E+ +  L  AI   +  + +    
Sbjct: 176 VLRYAIATDRAERDVTSDLKGALIAPPVQHRAAITEEKALGKLMAAIYGWNRGQPTTVAA 235

Query: 232 LRLMLIFANRSNELRLAKKADFDLEKRVWTVPEENNKVRK-------KQGGAIRRAIPPL 284
           L+L+ + A R  E+R A+ ++ DLEK VW +P    K+R+       +Q   + +A+ P+
Sbjct: 236 LKLLAMLALRPGEVRAARWSEIDLEKAVWIIPAGRTKMRRQHRTPLPRQAVEVLKALRPV 295

Query: 285 AEK 287
            ++
Sbjct: 296 TDR 298