Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 418 a.a., integrase from Pseudomonas simiae WCS417

 Score = 75.1 bits (183), Expect = 3e-18
 Identities = 89/390 (22%), Positives = 159/390 (40%), Gaps = 35/390 (8%)

Query: 2   SMAITDAWLRATNGKPYSGKTEISHRFGLGVRVSPKGKITWV--YRANINGKMQRIKLGE 59
           ++ ++D  L+    KP S    ++   GL +RV   G + W   YR  +      + LG 
Sbjct: 5   TLRLSDRQLKGV--KPASKDYVLTDGDGLQLRVRSNGSLLWNFNYREPVTKNRINMGLGT 62

Query: 60  YPAMKLRDAIQARESRAELVELGFDPRKSTRSAND----DSIITLNDLIDYWAENHARDN 115
           YP + L +A +      EL+  G DP+    + N+    ++  T  ++   W +   +D+
Sbjct: 63  YPELSLANARKMAVQARELLAQGIDPKVQRDTLNEAKRAETEHTFENVATAWFDLK-KDS 121

Query: 116 IKQCDA--LLKMFHTDITPTLGNYPAKQLELIDFMPVFLKAKRRVSAKHSANLMTRFKQ- 172
           +    A  + +     + P L   P  ++      P+ ++  R + AK S   + R  Q 
Sbjct: 122 VTPAYAEDIWRSLTLHVFPDLKTTPLAKITA----PMVIELLRPIEAKGSLETVKRLSQR 177

Query: 173 ---VLSYAVRHGLLKYNVLTELKKADVGVPTTPKRSRQDEQGVKALWKAIDDISIHESNK 229
              +++Y V  GL+  N L+ ++ A    P     +    + +  L   + + SI  + +
Sbjct: 178 LNEIMTYGVNSGLIFANPLSGIR-AVFKKPKKENMAALPPEELPELMLELANASIKRTTR 236

Query: 230 NFLRLMLIFANRSNELRLAKKADFDLEKRVWTVPEENNKVRKKQGGAIRRAIPPLAEKII 289
             +   L    R  E    + +D D EKR+WT+P E  K R+           PL+++  
Sbjct: 237 CLIEWQLHTMTRPAEAATTRWSDIDFEKRIWTIPPERMKKRRPHS-------IPLSDQ-A 288

Query: 290 MEQFAIWPNHTMMFPPVNTEQDRPMSANVPVDFGSKLAD-RIEELGF-PRTTNHDMRRTA 347
           M    I  +H+      + E   P   N      S+ A+  ++ +GF  R  +H MR  A
Sbjct: 289 MALLDILKSHS-----GHREYVFPADRNPRTHANSQTANMALKRMGFQDRLVSHGMRSIA 343

Query: 348 RNIWESMGVPYHVAETMLGHKVHTGVQSHY 377
             I    G    + E  L H     V+S Y
Sbjct: 344 STILNEHGWDPELIEVALAHVDKDEVRSAY 373