Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 394 a.a., integrase from Pseudomonas simiae WCS417

 Score = 97.4 bits (241), Expect = 6e-25
 Identities = 73/274 (26%), Positives = 117/274 (42%), Gaps = 7/274 (2%)

Query: 3   MAITDAWLRATNGKPYSGKTEISHRFGLGVRVSPKGKITWVYRANINGKMQRIKLGEYPA 62
           MA+TD    A   KP      I    GL + V+P G  +W +R    GK  RI +G YP 
Sbjct: 1   MALTDT--AAKQAKPRENGYTIPDSLGLSLYVAPSGVKSWHFRFTWLGKQVRISIGTYPE 58

Query: 63  MKLRDAIQARESRAELVELGFDPRKSTRSANDDSII----TLNDLIDYW-AENHARDNIK 117
             L++A   R+   E +  G DPR S R      I     T   + D W A      +  
Sbjct: 59  TGLKEARARRDEAREDIANGVDPRDSRREKKAGMIAAGGQTFRRVYDEWLAFRKGSISPG 118

Query: 118 QCDALLKMFHTDITPTLGNYPAKQLELIDFMPVFLKAKRRVSAKHSANLMTRFKQVLSYA 177
               +      D+ PTLG+     ++  D + +  + ++R S   +  +  R  QV SYA
Sbjct: 119 TYRVISNAMALDVLPTLGDRQIDAIKRADVIALIRRVEKRGSVATAVKVRQRMSQVFSYA 178

Query: 178 VRHGLLKYNVLTELKKADVGVPTTPKRSRQDEQGVKALWKAIDDISIHESNKNFLRLMLI 237
           +  G+++ N   E+      +             +  +  AI D +  +  K  L LM+ 
Sbjct: 179 IATGVIEANPTAEMHAVTEKMGQHKPHPFLPFSEMPRIMAAIRDCASGQQLKAALMLMIY 238

Query: 238 FANRSNELRLAKKADFDLEKRVWTVPEENNKVRK 271
            A+R  E+R A+ ++ DL+  +WT P    K+R+
Sbjct: 239 TASRPGEVRHAEWSEIDLDAAIWTTPAAKMKMRR 272