Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 413 a.a., integrase arm-type DNA-binding domain-containing protein from Variovorax sp. OAS795

 Score = 84.0 bits (206), Expect = 7e-21
 Identities = 95/381 (24%), Positives = 158/381 (41%), Gaps = 29/381 (7%)

Query: 5   ITDAWLRATNGKPYSGKTEISHRFGLGVRVSPKGKITWVYRANINGKMQRIKLGEYPAMK 64
           +TDA  R     P   +   S   GL ++VSP G   W ++  I G  + + LG YP + 
Sbjct: 2   LTDAQCRNATCPPDRRQARFSDSGGLYLQVSPAGSRRWFWKYRIAGAEKALALGRYPDVS 61

Query: 65  LRDAIQARESRAELVELGFDPRKSTRSANDDSIITLND-----LIDYWAENHARDNIKQC 119
           L  A +AR++       G DP ++ + A   + +  +D      ++++ ++ +R +    
Sbjct: 62  LTAARRARDAARLQKAGGRDPVEARKMAKLKAKVVASDTFKATALEWFGKHESRWSTHYG 121

Query: 120 DALLKMFHTDITPTLGNYPAKQLELIDFMPVFLKAKRRVSAKHSANLMTRFKQVLSYAVR 179
               +    D+ P        ++E I+ +    + + R +   +  ++   + V  YAV 
Sbjct: 122 IREKRNLEKDLFPLFAARRIGEIEPIELLAALRRVEERGALDVAHRVLMTARAVWRYAVA 181

Query: 180 HGLLKYNVLTELKKADVGVPTTPKRSRQ-----DEQGVKALWKAIDDISIHESNKNFLRL 234
                 ++  +LK A      TP + R      D   +  L + I         +  L+L
Sbjct: 182 TARAPRDITGDLKGA-----LTPHKKRHFAAITDPVKLGELVRVIRAYQGGPIVRAALQL 236

Query: 235 MLIFANRSNELRLAKKADFDLEKRVWTVPEENNKVR---KKQGGAIRRAIPPLAEKIIME 291
             +   R NELR A  ++ DL+K +WTVP    K R   K+ G      +P  A +I+  
Sbjct: 237 APMLFQRPNELRGAAWSEIDLDKALWTVPAARMKRRKDGKEHGDPHLVPLPRQAIEILRN 296

Query: 292 QFAIWPNHTMMFPPVNTEQDRPMSANVPVDFGSKLADRIEELGFPRT--TNHDMRRTARN 349
              I  +  M+FP      DRP+S N        L   +  LG+  T  T H  R TAR 
Sbjct: 297 LHPITGHGAMVFPG-ERSHDRPISDNT-------LRAALLTLGYGPTVQTVHGFRATART 348

Query: 350 IW-ESMGVPYHVAETMLGHKV 369
           +  E + V   V E  L H V
Sbjct: 349 LLAEVLEVEPLVIEAQLAHAV 369