Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

 Score = 85.1 bits (209), Expect = 3e-21
 Identities = 90/391 (23%), Positives = 161/391 (41%), Gaps = 37/391 (9%)

Query: 2   SMAITDAWLRATNGKPYSGKTEISHRFGLGVRVSPKGKITWV--YRANINGKMQRIKLGE 59
           ++ +TD  ++A+  KP   +  +    GL +R+ P G   W+  Y    NGK   +  G 
Sbjct: 5   TVKLTDKEIKAS--KPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGM 62

Query: 60  YPAMKLRDAIQARESRAELVELGFDPRKSTRSANDDSIITLNDLIDYWAENHARD--NIK 117
           YP + L  A ++  S  EL+  G DP+   +           ++ ++  EN  +D   IK
Sbjct: 63  YPDISLLQARKSLLSAKELIAQGIDPQDDRKRQQQ----VHKEIHEHTFENVTKDWFAIK 118

Query: 118 QCDA-------LLKMFHTDITPTLGNYPAKQLELIDFMPVFLKAKRRVSAKHSANLMTRF 170
           Q D        + +     I P + + P K +   + + +    + + S +    L  R 
Sbjct: 119 QNDVTPDYALDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRL 178

Query: 171 KQVLSYAVRHGLLKYNVLTELKKADVGVPTTPKRSRQDEQGVKALWKAIDDISIHESNKN 230
            +V+++A   GL++ N LT +K A    P     +      +  L  AI + SI  + + 
Sbjct: 179 NEVMNFATNCGLIQANPLTGIKAA-FKKPKKENMAALTPAELPELMSAIANASIKRTTRC 237

Query: 231 FLRLMLIFANRSNELRLAKKADFDLEKRVWTVPEENNKVRKKQGGAIRRAIPPLAE---K 287
            L   L    R  E   A+  + + E++VWT+P E  K R++    +   +  L E    
Sbjct: 238 LLEWQLHTMTRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKP 297

Query: 288 IIMEQFAIWPNHTMMFPPVNTEQDRPMSANVPVDFGSKLADRIEELGFP-RTTNHDMRRT 346
           I   +  I+P+      P N++     +AN+           ++ +GF  R  +H +R  
Sbjct: 298 ISGHRDFIFPSDRAPKKPCNSQ-----TANM----------ALKRMGFAGRLVSHGLRSL 342

Query: 347 ARNIWESMGVPYHVAETMLGHKVHTGVQSHY 377
           A       G    + E+ L H     V+S Y
Sbjct: 343 ASTTLNEQGFDPDLVESALAHVDDNQVRSAY 373