Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

 Score = 68.2 bits (165), Expect = 4e-16
 Identities = 79/368 (21%), Positives = 145/368 (39%), Gaps = 43/368 (11%)

Query: 29  GLGVRVSPKGKITWV--YRANINGKMQRIKLGEYPAMKLRDAIQARESRAELVELGFDPR 86
           GL +RV   G   W+  Y   I  K   I  G +P + L +A + R     L+ L  DP+
Sbjct: 30  GLQLRVKTNGTKLWILKYTHPITKKRNNISFGCFPDVSLAEARKRRSEAKTLLALNIDPK 89

Query: 87  KSTRSANDDSII--------TLNDLIDYWAENHARDNIKQ--CDALLKMFHTDITPTLGN 136
           +      D+ ++        T     D W     R+++K    D   +     I P LGN
Sbjct: 90  QH----KDEQLLKERAELENTFGKYSDRWL-TLKRESVKPETADKAYRALEKHILPKLGN 144

Query: 137 YPAKQLELIDFMPVFLKAKRRVSAKHSANLMTRFKQVLSYAVRHGLLKYNVLTELKKADV 196
            P + ++    + +    K + + +    L     +V+  AV  G ++ N L ++ K   
Sbjct: 145 VPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINEVMRLAVASGDIEVNYLADITK--- 201

Query: 197 GVPTTPKRSRQ---DEQGVKALWKAIDDISIHESNKNFLRLMLIFANRSNELRLAKKADF 253
            +   PKR      + + +  L +AI + +I  + +  L   L    R  E   A+  D 
Sbjct: 202 -LFPAPKRQHMVTIEPERLPELMQAIANANITLATRCLLEWQLHTMTRPIESATARWQDI 260

Query: 254 DLEKRVWTVPEENNKVRKKQGGAIRR---AIPPLAEKIIMEQFAIWPNHTMMFPPVNTEQ 310
           D + +VW +P E  K+++     +     A+  + + I   +  I+P++      VN++ 
Sbjct: 261 DFKNKVWVIPAERMKMKRPHTIPLTEQTLALLEIMKPISSHREYIFPSNKNPKSHVNSQ- 319

Query: 311 DRPMSANVPVDFGSKLADRIEELGFP-RTTNHDMRRTARNIWESMGVPYHVAETMLGHKV 369
               SAN+           ++ +G+  +  +H +R  A       G    + E  L H  
Sbjct: 320 ----SANM----------ALKRMGYKGQLVSHGLRALASTTLNEQGFNPDIIEAALAHVD 365

Query: 370 HTGVQSHY 377
              V+  Y
Sbjct: 366 KNEVRKAY 373