Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 398 a.a., symbiosis island integrase from Sphingobium sp. HT1-2

 Score = 70.9 bits (172), Expect = 6e-17
 Identities = 89/359 (24%), Positives = 146/359 (40%), Gaps = 30/359 (8%)

Query: 29  GLGVRVSPKGKITWVYRANINGKMQRIKLGEYPAMKLRDA-IQARESRAELVELGFDPRK 87
           GL ++VS  G  +W+ R    G+ + I LG    + L     +A E+R  + E G D   
Sbjct: 24  GLFLKVSKTGGASWLLRVQHEGERRDIGLGSAKLVTLAGVRAKAAEARRAIREDGRDLVA 83

Query: 88  STRSANDDSIITLNDLIDYWAENHAR-DNIKQCDALLKMFHTDITPTLGNYPAKQLELID 146
             R A  +S++     + Y+  + ++  N K  D  +        P+LG+ P   +   +
Sbjct: 84  EKRKAKAESVLFREAALTYFETHKSQWSNTKSEDQWINSMEAYAFPSLGSKPVGSITAGE 143

Query: 147 FMPVFLKAKRRVSAKHSANLMTRFKQVLSYAVRHGLLKYNVLTELKKADVGVPTTPKRSR 206
            +    K       +    +  R + VL++A   G        +   A  G+P   +RS 
Sbjct: 144 IITAISKIWTE-KPETGRRVKQRIRAVLNFAHARGWRSTEAPADALAAGNGLPK--QRSG 200

Query: 207 QDEQGVKALWKAIDDISIHESNKNFLRLMLIF----ANRSNELRLAKKADFDLEKRVWTV 262
           +    +           +  +   + RL L F    A RS E+RLA  ++ DLEK +WTV
Sbjct: 201 KHHAAMPYADLPAFITRLRTAGGTWSRLALEFVILTAARSQEVRLATWSEIDLEKGLWTV 260

Query: 263 PEENNKVRKKQGGAIRRAIP--PLAEKIIMEQFAIWPNHT-MMFPPVNTEQDRPMSANVP 319
           P ++ K+R      I   +P  P A  ++    AI    T ++FP  N      M+    
Sbjct: 261 PADHMKMR------IEHVVPLSPHALTVLHSAMAIRRQGTDLIFPGANGGAMSDMTL--- 311

Query: 320 VDFGSKLADRIEELGFPRTTNHDMRRTARN-IWESMGVPYHVAETMLGHKVHTGVQSHY 377
                 +  R++E     TT H  R + R  + E   VP  VAE  L H+    V+  Y
Sbjct: 312 ----LAVLRRMKE----PTTVHGFRSSFRTWVAEETNVPGEVAEAALAHQNRNEVERAY 362