Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 404 a.a., Integrase from Sphingobium sp. HT1-2

 Score = 82.4 bits (202), Expect = 2e-20
 Identities = 87/372 (23%), Positives = 154/372 (41%), Gaps = 24/372 (6%)

Query: 16  KPYSGKTEISHRFGLGVRVSPKGKITWVYRANINGKMQRIKLGEYPAMKLRDAIQARESR 75
           KP     +++   GL + V+P G + W  +   +G  +++ LG YP + L++A Q R+  
Sbjct: 11  KPREKPYKVADAKGLYILVNPNGSLLWRVKFRFHGIEKKMALGRYPDVGLKEARQKRDEA 70

Query: 76  AELVELGFDPRKSTRSANDD----SIITLNDLIDYWAENHARDNIKQCDALLKM--FHTD 129
            E +E G DP  +   A  +    +  T   + D + E   R+  K    L KM  F  +
Sbjct: 71  REQLEGGVDPLAARIQAKIEAEAAARTTFRVVTDEFIEKMEREG-KAPATLKKMRWFRDE 129

Query: 130 ITPTLGNYPAKQLELIDFMPVFLKAKRRVSAKHSANLMTRFKQVLSYAVRHGLLKYNVLT 189
           + PT+G+ P  ++   + +    + +R+   + +    +   +V  YAV     ++N   
Sbjct: 130 LQPTIGHRPIAEISAHELLNALKRFERKGHFESAIRARSFSGRVFRYAVATLRAQHNPAD 189

Query: 190 ELKKADVGVPTTPKRSRQDEQGVKALWKAIDDISIHESNKNFLRLMLIFANRSNELRLAK 249
            L+ A +        +  +   V  L +AID        +  L+L      R  ELR A+
Sbjct: 190 ILRGALITPKVKHHAALLEPAKVGELLRAIDGYGGKIETRIALQLAPHVYLRPGELRKAE 249

Query: 250 KADFDLEKRVWTVPEENNKVRKKQGGAIRRAIPPLAEKI-IMEQFAIWPNHTMMFPPVNT 308
             + D +  VW VP    K+RK        A+P   + + ++ +     N      P N+
Sbjct: 250 WGEIDFDAAVWRVPAGRTKMRKP------HAVPLSTQVVTLLRELRAMGNLGSYLFPANS 303

Query: 309 EQDRPMSANVPVDFGSKLADRIEELGFPR--TTNHDMRRTARNIWESMGVPYHVA-ETML 365
              +P+  N        L   +  LGF R   T+H  R  A  +    G+ +  A E  L
Sbjct: 304 TFLKPICENT-------LNVALRRLGFTRDEMTSHGFRSIASTLLNESGLWHPDAIERSL 356

Query: 366 GHKVHTGVQSHY 377
            H+    V++ Y
Sbjct: 357 AHRERDSVRAAY 368