Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 400 a.a., Phage integrase from Sphingobium sp. HT1-2

 Score = 81.6 bits (200), Expect = 3e-20
 Identities = 91/381 (23%), Positives = 154/381 (40%), Gaps = 30/381 (7%)

Query: 10  LRATNGKPYSGKTEISHRFGLGVRVSPKGKITWVYRANINGKMQRIKLGEYPAMKLRDAI 69
           L  +  KP     +++   GL + V+P+G   W      +GK + + +G +P + L +A 
Sbjct: 6   LALSKAKPREKPYKLADGHGLYLLVTPQGGRYWRMNYRFDGKAKTMAMGVFPLITLAEAR 65

Query: 70  QARESRAELVELGFDP---RKSTRSANDDSIIT-LNDLIDYWAENHARDNIKQCD-ALLK 124
           + RE   +L+  G DP   RK   +       T    + + W     R+ +       +K
Sbjct: 66  EKREDARKLLAAGSDPCAKRKEIEAQEAFEATTGFRIVAEEWLAKREREGLGDITIGKIK 125

Query: 125 MFHTDITPTLGNYPAKQLELIDFMPVFLKAKRRVSAKHSANLMTRFKQVLSYAVRHGLLK 184
                  P+LG+    ++  ++ + V  + + R   + +  L +   +V  YA+  G  +
Sbjct: 126 WLLEFAYPSLGDRKIGEITSMELLAVLRQVEGRGRHETARRLRSVCGRVFRYAIATGRAE 185

Query: 185 YNVLTELKKADVGVPTTPKRSR----QDEQGVKALWKAIDDISIHESNKNFLRLMLIFAN 240
           +++   L+ A     TTPK          Q V  L +AID    H   K  LRL      
Sbjct: 186 HDLSANLRDA----LTTPKVKHLAAITSSQQVGPLLRAIDGFDGHAVTKAALRLAPHVFV 241

Query: 241 RSNELRLAKKADFDLEKRVWTVPEENNKVRKKQGGAIRRAIPPLAEKIIMEQFAIWPNHT 300
           R  ELR A+  + D EK +W++P E  K+R+     + R     +  I+     +     
Sbjct: 242 RPGELRHAEWPEIDFEKALWSIPAEKMKMRRPHRVPLSRQ----SLTILSSIREVTGAGK 297

Query: 301 MMFPPVNTEQDRPMSANVPVDFGSKLADRIEELGF--PRTTNHDMRRTARNIWESMGVPY 358
            +FP   + + RPMS N        L   +  LG+     T+H  R  A  +   MG  +
Sbjct: 298 FVFPGFQSLK-RPMSENA-------LNGALRRLGYSGDEMTSHGFRAMASTLLNEMG-KW 348

Query: 359 H--VAETMLGHKVHTGVQSHY 377
           H    E  L H     V+  Y
Sbjct: 349 HPDAIERQLAHAEADAVRRAY 369