Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 423 a.a., putative Phage integrase from Pseudomonas putida KT2440

 Score = 65.1 bits (157), Expect = 4e-15
 Identities = 77/353 (21%), Positives = 139/353 (39%), Gaps = 23/353 (6%)

Query: 44  YRANINGKMQRIKLGEYPAMKLRDAIQARESRAELVELGFDPRKSTRSANDDSIITLNDL 103
           +R+   G    I  G++  +     + A +  A L ++         S+    ++T  +L
Sbjct: 32  HRSRERGSWYLIHKGKWNLIGSYPELSAAKVAAALPDIRLRLEAGEGSSLSSWVLT-GEL 90

Query: 104 IDYWAENHARD---NIKQCDALLKMFHTDITPTLGNYPAKQLE--LIDFMPVFLKAKRRV 158
           +D++AE  +RD   + K+           + P LG  P  Q++  L+D   +    +  +
Sbjct: 91  LDWFAERMSRDRSLSAKRKRTAASAIKQHLAPRLGETPLAQIDKALLD-RELMWPLQESL 149

Query: 159 SAKHSANLMTRFKQVLSYAVRHGLLKYNVLTELKKADVG-VPTTPKRSRQDEQGVKALWK 217
           S  +   +          A + GL+  N +  ++  D      T K SR     ++ L  
Sbjct: 150 SIDYVRLVFQLLALAFRQAAKLGLISTNPMAGIRFRDFSKAKVTVKPSRLRGVHLEDLMA 209

Query: 218 AIDDISIHESNKNFLRLMLI-FANRSNELRLAKKADFDLEKRVWTVPEENNKVRKKQGGA 276
            +     H      L LM++    R  E R+A+ +   L +R W +P E+ K   +    
Sbjct: 210 RMKSTLAHNPQHGLLALMMLCHGTRLGETRMARWSHISLAEREWFIPAEHTKTGVQHRLP 269

Query: 277 IRRAIPPLAEKIIMEQFAIWPNHTMMFPPVNTEQDRPMSANVPVDFGSKLADRIEELGFP 336
           +   +  L       Q         +FP     Q +PMS        SK +     +G  
Sbjct: 270 LTDQVRFLLMACREIQLKQGYEGEFLFPG---RQGKPMSE-------SKASAVFSVMGQG 319

Query: 337 RTTNHDMRRTARNIWESMGVPYHVAETM----LGHKVHTGVQSHYLGKMRLSL 385
             T+HD+R+ AR  W  +GV + V E +    +GH V   +QS  + + R +L
Sbjct: 320 EWTSHDLRKLARTGWADLGVDHLVGELLINHAMGHNVKVYIQSDVMARKREAL 372