Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 418 a.a., Integrase from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 81.6 bits (200), Expect = 4e-20
 Identities = 87/373 (23%), Positives = 154/373 (41%), Gaps = 21/373 (5%)

Query: 5   ITDAWLRATNGKPYSGKTEISHRFGLGVRVSPKGKITWVYRANINGKMQRIKLGEYPAMK 64
           +TD  L+  N KP +   +++ R G+ V VSP G +T+ Y   +NG+ + + +G Y A  
Sbjct: 2   LTDTALK--NLKPKAAPYKVTDRDGMYVTVSPVGTVTFRYDYRMNGRRETLTIGRYGADG 59

Query: 65  LRDA------IQARESRAELVELGFDPRKSTRSANDDSIITLNDLIDYWAENHARDNIKQ 118
           L  A      I AR + ++      + ++  R  ++       +  D WA+  AR     
Sbjct: 60  LSLARARERCIDARRAVSDGKSPAQEKQREKRRLSEAK--NFQEFTDRWAKG-ARMADST 116

Query: 119 CDALLKMFHTDITPTLGNYPAKQLELIDFMPVFLKAKRRVSAKHSANLMTRFKQVLSYAV 178
                 +   DI P   N    ++   D   +  K K R +   + ++    KQ+  +A+
Sbjct: 117 RSMRKSILDRDILPAFKNRLLTEITSDDLRDLCNKVKGRGAPATAVHVRDIVKQIYGFAI 176

Query: 179 RHGLLKYNVLTELKKADVGVPTTPKRSRQDEQGVKALWKAIDDISIHESNKNFLRLMLIF 238
            HG    N   ++  + +     PK        ++ + + ++ ++ + + +  LRL+L+ 
Sbjct: 177 LHGEKVANPADDVGPSSIAT-FVPKDRALSPVEIRLMHQQLETVASYPTIRLALRLILLT 235

Query: 239 ANRSNELRLAKKADFDLEKRVWTVPEENNKVRKKQGGAI-RRAIPPLAEKIIMEQFAIWP 297
             R  EL  A   + D E  +WT+P+E  K  K     + ++A+       IM       
Sbjct: 236 LVRKGELIHATWNEIDFENALWTIPKERMKGSKAHNVYLSQQALD------IMVALRTCA 289

Query: 298 NHTMMFPPVNTEQDRPMSANVPVDFGSKLADRIEELGFPRT--TNHDMRRTARNIWESMG 355
             +    P   E D+ MS          +A R +E G P    T HD+RRT   I   +G
Sbjct: 290 GGSRFVLPSRYEPDKCMSNATLNRVTQLVAARAKEKGLPLDGFTVHDLRRTGSTILNELG 349

Query: 356 VPYHVAETMLGHK 368
                 E  L H+
Sbjct: 350 FNSDWIEKCLAHE 362