Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 445 a.a., site-specific integrase from Magnetospirillum magneticum AMB-1

 Score = 74.7 bits (182), Expect = 5e-18
 Identities = 87/380 (22%), Positives = 157/380 (41%), Gaps = 33/380 (8%)

Query: 1   MSMAITDAWLRATNGKPYSGKT---EISHRF--GLGVRVSPKGKITWVYRANINGKMQRI 55
           ++ A+TD+ ++    KP  G T   EIS     GL +RVSP G+  W  +  +  +  R 
Sbjct: 37  LAKALTDSVVKTL--KPERGATTWREISDSGCRGLRLRVSPSGEKVWAVKVTVGAQRVRH 94

Query: 56  KLGEYPAMKLRDAIQARESRAELVELGFDPRKSTRSANDDSIITLNDLIDYWAENHARDN 115
            +G YPA+ L +A +  E+       G  P +       +++       +Y      R +
Sbjct: 95  TIGAYPAVSLGEARKRAEAYLATARDGASPDELDARQRAETMTVTMAHSEY--IEAMRSS 152

Query: 116 IKQCDALLK--MFHTDITPTLGNYPAKQLELIDFMPVFLKAKRRVSAKHSANLMTRFKQV 173
           ++     LK  MF T +   LG    + +   D + V      +     +  + +    +
Sbjct: 153 LRASTISLKKTMFKTHVEGALGKRLIRTVRRSDVVDVVGGVSAKGFPVQANRVFSEVMAL 212

Query: 174 LSYAVRHGLLKYNVLTELKKADV-----GVPTTPKRSRQDEQGVKALWKAIDDISIHESN 228
           L +  + G +  + +   +K DV     G     +R    E  + A+W    ++   +  
Sbjct: 213 LRWCEQKGYV--DGVPSARKKDVRAATGGAKELARRRVLSEGEIIAVWNLTANMG--DLT 268

Query: 229 KNFLRLMLIFANRSNELRLAKKADFDLEKRVWTVPEENNKVRKKQGGAIRRAIPPLAEKI 288
            +FLRL+L+   R +E+RL    + D++  +WT+P      R K G +    +P  A  I
Sbjct: 269 GDFLRLLLLTGQRRDEVRLMVWGEVDMDASLWTIPAS----RYKTGYSHTVPLPKQAMDI 324

Query: 289 IMEQFAIWPNHTMMFPPVNTEQDRPMSANVPVDFGSKLADRIEELGFPRT-TNHDMRRTA 347
           +  +   W      +      +++P +        S +    +ELG     T HD+RRT 
Sbjct: 325 LRSR---WVEGATGYVLAGRGENKPFNG-----AASAVRRLRKELGGKADFTLHDIRRTL 376

Query: 348 RNIWESMGVPYHVAETMLGH 367
           R     MG+    AE ++GH
Sbjct: 377 RTGLARMGIDETTAEMVIGH 396