Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 409 a.a., tyrosine-type recombinase/integrase from Serratia liquefaciens MT49

 Score = 65.5 bits (158), Expect = 3e-15
 Identities = 87/391 (22%), Positives = 156/391 (39%), Gaps = 57/391 (14%)

Query: 5   ITDAWLRATNGKPYSGKTEISHRFGLGVRVSPK---GKITWVYR--ANINGKMQRIKLGE 59
           +TD  +++T  KP   +  +    GL +R++P    GK  W +R    +  K  ++ LG 
Sbjct: 8   LTDTEIKST--KPAEKEVNLFDGDGLLLRIAPLAKGGKKNWYFRYAVPVTKKRTKVSLGT 65

Query: 60  YPAMKLRDAIQARESRAELVELGFDPR-KSTRSAN---DDSIITLNDLIDYWAENHAR-D 114
           YP + L  A   R+    L+  G DP+  +T+ AN   + +  T   +   W +   +  
Sbjct: 66  YPHLTLAKARALRDEYLSLLANGIDPQVHNTQKANALKEATEHTFQAVAKKWLDEKVKTS 125

Query: 115 NIKQCDA--LLKMFHTDITPTLGNYPAKQLELIDFMPVFLK-----AKRRVSAKHSANLM 167
            I Q  A  + +    +I PTLG+ P K++      P  LK      ++R   +    ++
Sbjct: 126 GISQDHANDIWRSLERNIFPTLGDTPIKEIR-----PKMLKQHLDPIEKRGVLETLRRII 180

Query: 168 TRFKQVLSYAVRHGLLKYNVLTEL-----KKADVGVPTTPKRSRQDEQGVKALWKAIDDI 222
           +R  ++  +A    L+++N    L     K     +P  P         +      + + 
Sbjct: 181 SRLNEIFRWAATEELIEFNPADNLAQRFSKPKKQNMPALPPTE------LPRFLTVLKNA 234

Query: 223 SIHESNKNFLRLMLIFANRSNELRLAKKADFDLEKRVWTVPEENNKVRKKQGGAIRRAIP 282
           S+    +  +   L+   R  E    + AD D +  +W +P E  K++K     + +   
Sbjct: 235 SVRMETRLLIEWQLLTWVRPGEAVRTRWADIDTDNSMWNIPAEFMKMKKPHKVPLSKE-- 292

Query: 283 PLAEKIIMEQFAIWPNHTMMFP----PVNTEQDRPMSAN-VPVDFGSKLADRIEELGFPR 337
             A ++I    +I  N   +FP    P+N   ++  +A  + + FG +L           
Sbjct: 293 --ALRVIESMKSISGNREWVFPSIKAPLNHMHEQTANAAIIRMGFGGEL----------- 339

Query: 338 TTNHDMRRTARN-IWESMGVPYHVAETMLGH 367
              H MR  AR    ES      V E  L H
Sbjct: 340 -VAHGMRSIARTAAEESSKFRTEVLEAALAH 369