Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., CPZ-55 prophage; predicted integrase (RefSeq) from Escherichia coli BW25113

 Score = 63.9 bits (154), Expect = 7e-15
 Identities = 84/352 (23%), Positives = 144/352 (40%), Gaps = 54/352 (15%)

Query: 16  KPYSGKTEISHRFGLGVRVSPKGKITWVYRANINGKMQRIKLGEYPAMKLRDAIQARESR 75
           KPY  K   S   GL + V P G   W +R  +N +     +G YP + L++A +     
Sbjct: 19  KPY--KLTDSLTPGLFLLVHPNGSKYWRFRYWLNKREFLQAIGVYPLITLKEARRRATES 76

Query: 76  AELVELGFDPRKSTRSANDDSIITLNDLIDY--------------WAENHARDNIKQCDA 121
             L+  G +P +  R   + +I  LN    +              W+E++A    KQ  +
Sbjct: 77  RSLIANGINPVEQAR--KEKAIDALNMAAGFKKVAEDWFATRVGGWSESYA----KQVRS 130

Query: 122 LLKMFHTDITPTLGNYPAKQLELIDFMPVFLKAKRRVSAKHSANLMTRFKQVLSYAVRHG 181
            L+    D+ P LG      +   D +   L+ K R + + +  L  R  ++  +AV   
Sbjct: 131 ALE---KDVYPVLGKRSIVDITARDVL-ALLQKKERTAPEQARKLRRRIGEIFKFAVITE 186

Query: 182 LLKYNVLTELKKADVGVPTTPKRSRQDEQG------VKALWKAIDDISIHESNKNFLRLM 235
           L+  N + +L        T  K  R           + A +KA++     +  +  +RL+
Sbjct: 187 LVTRNPVADL-------DTALKARRPGHNAWIPISEIPAFYKALERAGSVQI-QTAIRLL 238

Query: 236 LIFANRSNELRLAKKADFDLEKRVWTVPEENNKVRKKQGGAIRRAIPPLAEKIIMEQFAI 295
           ++ A R+ ELRL +    +LE    T+P E  K R+     + R     A +++ +QF  
Sbjct: 239 ILTALRTAELRLCRWEWINLEDATITLPAEVMKARRPHVVPLSRQ----AVELLQDQFTR 294

Query: 296 WPNHTMMFPPVNTEQDRPMSANVPVDFGSKLADRIEELGFPR-TTNHDMRRT 346
                 +FP      D+P+SA       S +   +E +G+    T H  R T
Sbjct: 295 SGYSAFVFP--GRFMDKPLSA-------SAILKALERIGYKSIATGHGWRTT 337