Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 385 a.a., CPS-53 (KpLE1) prophage; predicted prophage CPS-53 integrase (NCBI) from Escherichia coli BW25113

 Score = 73.2 bits (178), Expect = 1e-17
 Identities = 61/244 (25%), Positives = 112/244 (45%), Gaps = 4/244 (1%)

Query: 29  GLGVRVSPKGKITWVYRANINGKMQRIKLGEYPAMKLRDAIQARESRAELVELGFDPRKS 88
           GL + V   GK  W  R  I+GK + + +G+YP M L++A     +  + + +G DP K+
Sbjct: 24  GLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDISVGIDPVKA 83

Query: 89  TRSANDDSIITLNDLIDYWAENHARD-NIKQCDALLKMFHTDITPTLGNYPAKQLELIDF 147
            +++++++  + + +   W E+  +  ++     L KMF  DI P +G    + +E +  
Sbjct: 84  KKASSNNN--SFSAIYKEWYEHKKQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQL 141

Query: 148 MPVFLKAKRRVSAKHSANLMTRFKQVLSYAVRHGLLKYNVLTELKKADVGVPTTPKRSRQ 207
           + V  + + R + + +     R  +V  YA+  G  KYN   +L  A  G          
Sbjct: 142 LEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLP 201

Query: 208 DEQGVKALWKAIDDISIHESNKNFLRLMLIFANRSNELRLAKKADFDLEKRVWTVPEENN 267
            +Q + A  KA+   S    +    +++   A R+ ELR     + D E R+ T+     
Sbjct: 202 ADQ-IPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVM 260

Query: 268 KVRK 271
           K RK
Sbjct: 261 KGRK 264