Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 401 a.a., integrase arm-type DNA-binding domain-containing protein from Erwinia tracheiphila SCR3

 Score =  120 bits (302), Expect = 5e-32
 Identities = 96/360 (26%), Positives = 165/360 (45%), Gaps = 17/360 (4%)

Query: 29  GLGVRVSPKGKITWVYRANINGKMQRIKLGEYPAMKLRDAIQARESRAELVELGFDPRKS 88
           GL ++V PKG+  W+ R  I  K + I LG+   + L +     E     V  G DP   
Sbjct: 20  GLYLKVPPKGEPYWMLRYTIGSKRREITLGKVSHLSLSEVRSLAEDTRRKVATGDDPIAE 79

Query: 89  TRSANDDSIITLNDLIDYWAENHARDNIKQCDALLKMFHTDITPTLGNYPAKQLELIDFM 148
            +      + T++ L + W ++  +  +K      +++  DI PT+G     ++  +D  
Sbjct: 80  KKLNRPKQLTTVDGLFEDWHKDLVK-RLKHPHIPERVYRKDIAPTIGRLALVKVNPLDVR 138

Query: 149 PVFLKAKRRVSAKHSANLMTRFKQVLSYAVRHGLLKYNVLTELKKADVGVPTTPKRSRQD 208
            + LK         S + +   KQ+  +A++ GLL  N  +  K  D G     +     
Sbjct: 139 SILLKITDSGRPTISNDALLYMKQLFDHAIKLGLLLNNPASAFKVNDAGGIEKSRERALS 198

Query: 209 EQGVKALWKAIDDISIHESNKNFL--RLMLIFANRSNELRLAKKADFDLEKRVWTVPEEN 266
            + +  ++K   + S   S  N+L   L+L+ A R +EL  A  A+F+L+++ W++P+E 
Sbjct: 199 LEEISQVFKVFREHSDSFSRDNYLACALLLLLAVRKSELTEAPWAEFNLDEKKWSLPKE- 257

Query: 267 NKVRKKQGGAIRRAIPPLAEKIIMEQFAIWPNHTMMFPPVNTEQDRPMSAN-----VPVD 321
              R K G  I   +PPLA KI+ E      +   +FP     + + M  +     +   
Sbjct: 258 ---RSKSGVGIVIPLPPLAIKILEELKVRAWDSPYVFPNRRVSKSQHMGKDTLNRAIAKL 314

Query: 322 FGSKLADRIEEL----GFPRTTNHDMRRTARNIWESMGVPYHVAETMLGHKVHTGVQSHY 377
           FG++   + +           T HD+RRT+R++  S+ VP HVAE  L HK+  GV+  Y
Sbjct: 315 FGAEPGKKKQPPNVMGNIEYFTVHDLRRTSRSLLASLSVPPHVAERCLNHKL-KGVEGIY 373