Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., integrase arm-type DNA-binding domain-containing protein from Erwinia tracheiphila SCR3

 Score = 95.9 bits (237), Expect = 2e-24
 Identities = 70/285 (24%), Positives = 132/285 (46%), Gaps = 33/285 (11%)

Query: 3   MAITDAWLRATNGKPYSGKTEISHRFGLGVRVSPKGKITWVYRANINGKMQRIKLGEYPA 62
           M++TD+  +A N KP   + +++  FG+ +RV+PKG   W       GK +   +G YPA
Sbjct: 1   MSLTDS--KAKNAKPLEKEYKLTDGFGMFLRVTPKGYKYWQMAYRFEGKQKIFSIGVYPA 58

Query: 63  MKLRDAIQARESRAELVELGFDP--RKSTR----SANDDSIITLNDLIDYWAENHARDNI 116
           + L D  Q R+    L+  G DP  RK        A  D   + + +   W     + + 
Sbjct: 59  VSLADVRQRRDEARRLLAQGIDPNARKQAEVKELKAKRDKTRSFSIVAKAWFSTKTKWSE 118

Query: 117 KQCDALLKMFHTDITPTLGN------------YPAKQLELIDFMPVFLKAKRRVSAKHSA 164
              D++ K   T + P  G+             P K++E + ++ V ++ ++ ++A    
Sbjct: 119 DYGDSVWKRLETYVFPATGDKDVAELDTGNLPVPVKKVEALGYLEVAMRIQQYIAA---- 174

Query: 165 NLMTRFKQVLSYAVRHGLLKYNVLTELKKADVGVPTTPKRSRQDEQGVKALWKAIDDISI 224
                   +L +AV+  L+++N   +++ A V  P T  R   + + +  L K I     
Sbjct: 175 --------ILRHAVQQKLIRHNPAYDMEGA-VQKPHTEHRPALELEEIPQLLKKIAGYKG 225

Query: 225 HESNKNFLRLMLIFANRSNELRLAKKADFDLEKRVWTVPEENNKV 269
           H      ++L L+   RS+ELR A+ ++ D++ ++W +PE+   +
Sbjct: 226 HRLTILAIQLNLMIFIRSSELRFARWSEIDVKSKLWVIPEQREAI 270