Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 383 a.a., tyrosine-type recombinase/integrase from Erwinia tracheiphila SCR3

 Score = 75.5 bits (184), Expect = 2e-18
 Identities = 87/365 (23%), Positives = 154/365 (42%), Gaps = 29/365 (7%)

Query: 29  GLGVRVSPKGKITWVYRANINGKMQRIKLGEYPAMKLRDAIQARESRAELVELGFDPRKS 88
           GL + V   GK  W  R  I+GK + + +G+YP M L++A        + V +G DP K+
Sbjct: 24  GLYLYVPASGKKVWQLRYKIDGKEKVLTVGKYPLMSLQEARDKAWLARKDVSVGIDPVKA 83

Query: 89  TRSANDDSIITLNDLIDYWAENHARD-NIKQCDALLKMFHTDITPTLGNYPAKQLELIDF 147
            + +  D+  +   +   W E+  +  ++   + L +MF  DI P +G     ++E +  
Sbjct: 84  KKLSVKDN--SFGAIYHEWYEHKKQVWSLGYAEELARMFRDDILPMIGGLEINEIEPMKI 141

Query: 148 MPVFLKAKRRVSAKHSANLMTRFKQVLSYAVRHGLLKYNVLTELKKADVGVPTTPKRSRQ 207
           + V  + + R + + +     R  +V  YA+  G  KYN   +L  A  G          
Sbjct: 142 LEVIRRFEERGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKQNYPFLP 201

Query: 208 DEQGVKALWKAIDDISIHESNKNFLRLMLIFANRSNELRLAKKADFDLEKRVWTVPEENN 267
            +Q + A  +A+   S    ++   +++   A R+ ELR  + A+ D   R  T+  E  
Sbjct: 202 ADQ-IPAFNRALAGYSGSIVSRIATQILQYTALRTKELRSMQWANVDFATRTITIAAEVM 260

Query: 268 KVRKKQGGAIRRAIPPLAEKII----MEQFAIWPNHTMMFPPVNTEQDRPMSANVPVDFG 323
           K R       R  I P+++++I    M +    P    +F   N ++ +P+S N  +   
Sbjct: 261 KGR-------RIHIVPMSDQVISLLEMLRPITAPVSAFVFAGRN-DKKKPISENAVLLV- 311

Query: 324 SKLADRIEELGFP-RTTNHDMRRTARNIWESMGVPYHVAETMLGHKVH---TGVQSH--Y 377
                 I ++G+    + H  R     I      P+   E  L H       G+ +H  Y
Sbjct: 312 ------IRQIGYEGLASGHGFRHQFSTIMNENEWPHDAIERQLAHTDSGSIRGIYNHAQY 365

Query: 378 LGKMR 382
           L K R
Sbjct: 366 LEKRR 370