Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 432 a.a., integrase arm-type DNA-binding domain-containing protein from Erwinia tracheiphila SCR3

 Score = 78.2 bits (191), Expect = 4e-19
 Identities = 68/266 (25%), Positives = 110/266 (41%), Gaps = 20/266 (7%)

Query: 16  KPYSGKTEISHRFGLGVRVSPKGKITW--VYRANINGKMQRIKLGEYPAMKLRDAIQARE 73
           KP     +++   GL + V+P+G   W   YR   + K  R+  G +PA+ L DA   R+
Sbjct: 12  KPKDKAYKLADGMGLYLEVTPRGSKYWRMKYRRPSDKKEDRLAFGVWPAVSLADARAKRD 71

Query: 74  SRAELVELGFDPRKSTRSANDDS-------IIT---LNDLIDYWAENHARDNIKQCDALL 123
               L+  GFDP+   + A  ++        IT       +  W   HAR       A+L
Sbjct: 72  DAKRLLAKGFDPKAEQKGAQAEAEGAYTFETITRQWYGGCLKRWTPTHAR-------AVL 124

Query: 124 KMFHTDITPTLGNYPAKQLELIDFMPVFLKAKRRVSAKHSANLMTRFKQVLSYAVRHGLL 183
           +     + P +G    +QL+    +     A        +  L  R   V+ YAV++GL+
Sbjct: 125 RSLEHYVFPHIGGADIRQLKTRQLLAAVNSADSANKHDVAKRLRQRITSVMRYAVQNGLI 184

Query: 184 KYNVLTELKKADVGVPTTPKRSRQDEQGVKALWKAIDDISIHESNKNFLRLMLIFANRSN 243
             N   ++  A V    T  R          L   I + S     +  + L L+   RS+
Sbjct: 185 DSNPALDMAGA-VESAKTKHRPTLPHARFGELLSRISNYSGRPVTRLAVELTLLTFLRSS 243

Query: 244 ELRLAKKADFDLEKRVWTVPEENNKV 269
           ELR A   +FD ++ VW VP +  ++
Sbjct: 244 ELRFAWWDEFDFDRAVWNVPAKRPEI 269