Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 409 a.a., integrase from Escherichia coli ECRC62

 Score = 65.9 bits (159), Expect = 2e-15
 Identities = 87/394 (22%), Positives = 159/394 (40%), Gaps = 63/394 (15%)

Query: 5   ITDAWLRATNGKPYSGKTEISHRFGLGVRVSPK---GKITWVYR--ANINGKMQRIKLGE 59
           +TD  +++T  KP   +  +    GL +R++P    GK  W +R    ++ K  ++ LG 
Sbjct: 8   LTDTEIKST--KPADKEINLFDGDGLILRIAPLAKGGKKNWYFRYAVPVSKKRTKMSLGT 65

Query: 60  YPAMKLRDAIQARESRAELVELGFDPR-------KSTRSANDDSIITLNDLIDYWAENHA 112
           YP + L  A   R+    L+  G DP+       K+ +SA +    TL  +   W +   
Sbjct: 66  YPHLTLAKARALRDENLSLLANGVDPQVHNNNKAKALKSAIEH---TLQAVARKWLDEKV 122

Query: 113 R-DNIKQ--CDALLKMFHTDITPTLGNYPAKQLELIDFMPVFLK-----AKRRVSAKHSA 164
           +   I Q   + + +    +I PTLG+ P K++      P  LK      ++R   +   
Sbjct: 123 KTSGISQDHAEDIWRSLERNIFPTLGDTPIKEIR-----PKMLKQHLDPIEKRGVLETLR 177

Query: 165 NLMTRFKQVLSYAVRHGLLKYNVLTEL-----KKADVGVPTTPKRSRQDEQGVKALWKAI 219
            +++R  ++  YA    L+++N    L     K     +P  P         +      +
Sbjct: 178 RIISRLNEIFRYAATEELIEFNPADNLAQRFSKPKKQNMPALPPTE------LPRFLTVL 231

Query: 220 DDISIHESNKNFLRLMLIFANRSNELRLAKKADFDLEKRVWTVPEENNKVRKKQGGAIRR 279
           ++ S+    +  +   L+   R  E    + +D D+E  +W +P E  K++K     + +
Sbjct: 232 NNASVRMETRLLIEWQLLTWVRPGEAVRTRWSDIDIETGMWNIPAEFMKMKKPHKVPLSK 291

Query: 280 AIPPLAEKIIMEQFAIWPNHTMMFP----PVNTEQDRPMSAN-VPVDFGSKLADRIEELG 334
                A +++    AI  +   +FP    P+N   ++  +A  + + FG +L        
Sbjct: 292 E----ALRVLDLMKAISGHREWVFPSIKAPLNHMHEQTANAAIIRMGFGGEL-------- 339

Query: 335 FPRTTNHDMRRTARNIWESMG-VPYHVAETMLGH 367
                 H MR  AR   E  G     V E  L H
Sbjct: 340 ----VAHGMRSIARTAAEESGKFRTDVLEAALAH 369