Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 407 a.a., integrase from Escherichia coli ECRC62

 Score =  126 bits (316), Expect = 1e-33
 Identities = 97/378 (25%), Positives = 172/378 (45%), Gaps = 20/378 (5%)

Query: 5   ITDAWLRATNGKPYSGKTEISHRFGLGVRVSPKGKITWVYRANING---KMQRIKLGEYP 61
           ++D  L+A  G        I+   GL V+VS +G ++WV+   + G   K++R+ LG YP
Sbjct: 7   LSDKKLKALLGSEREAPIMIADGEGLSVKVSKQGNVSWVFSYRLGGRGSKLERLTLGRYP 66

Query: 62  AMKLRDAIQARESRAELVELGFDPRKSTRSANDDSI--ITLNDLIDYWAENHARDNIKQC 119
            M L+ A + RE   + +  G DP+     + ++++  +T+ D ++YW  N+AR      
Sbjct: 67  DMPLKLAREKREQCRQWLAGGLDPKTEIELSTEETLKPVTVKDALEYWLVNYARRKRSDE 126

Query: 120 DALLKMFHTDITPTLGNYPAKQLELIDFMPVFLKAKRRVSAKHSANLMTRFKQVLSYAVR 179
             +       I P LG YP  + E   ++  F +  +      +  +    KQ L +   
Sbjct: 127 ALVRAQLRKHIYPRLGRYPITRCETRHWVACFDEINQ-TKPMTAGRMFQISKQALRFCKV 185

Query: 180 HGLLKYNVLTELKKADVGVPTTPKRSRQDEQGVKALWKAIDDISIHESNKNFLRLMLIFA 239
                 + L  L   DVG P+  +     +  +  +W+  D           L+++++F 
Sbjct: 186 RRYAASDALAFLTIQDVGQPSGQRDRVLSDSELADVWRCTDSDDQQPYYSRLLKMLVLFG 245

Query: 240 NRSNELRLAKKADFDLEKRVWTVPEENNKVRKKQGGAIRRAIPPLAEKIIMEQFAIWPNH 299
            R+ E+RL++ +++D    +WTVP+E++K R+K   +I  AI P  E++  E        
Sbjct: 246 ARTMEVRLSRWSEWDFTSWIWTVPKEHSKTREKIVRSIPEAIRPWLEELKRE-----TGK 300

Query: 300 TMMFPPVNTEQDRPMSANVPVDFGSKLADRIEELGFPRTTNHDMRRTARNIWESMGVPYH 359
           T +       +DR   A   V    +   +      P T  HD+RRT      +MG+  H
Sbjct: 301 TGLL----LGEDRTRQA---VSLKGRRLFKDFHHNEPWTL-HDLRRTFSTGLNNMGIAPH 352

Query: 360 VAETMLGHKVHTGVQSHY 377
           + E +LGH +  GV + Y
Sbjct: 353 IVELLLGHAL-PGVMAIY 369