Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., Integrase from Escherichia coli ECRC100

 Score = 91.7 bits (226), Expect = 2e-23
 Identities = 76/290 (26%), Positives = 140/290 (48%), Gaps = 31/290 (10%)

Query: 98  ITLNDLIDYWAENHARDNIKQC------DALLKMFHTDITPTLGNYPAKQLELIDFMPVF 151
           +T+   +DYW +N+    +++         ++K  H D  P   N PA  + +  ++ + 
Sbjct: 1   MTVAQCLDYWFDNYVSTTLREKTQALYRSTVMKRMH-DAFP---NRPASSITVKQWVDL- 55

Query: 152 LKAKRRVSAKHSANLMTRFKQVLSYAVRHGLLKYNVLTELKKADVGVPTTPKRSRQDEQG 211
           L  + + + + +  ++++ +  +S+ +R  L+    +  ++  D G              
Sbjct: 56  LTEEEKDNPRRARQVLSQLRSAISWCMRRQLIDSCAIMSIQPRDFGSRAEVGDRVLSYHE 115

Query: 212 VKALWKAIDDISIHESNKNFLRLMLIFANRSNELRLAKKADFDLEKRVWTVPEENNKVRK 271
           +  +W AI+      SNK   ++++++  R +ELRLA K +FDL   VWTVP+E++K+  
Sbjct: 116 LAKIWLAIERSRASTSNKLLHQMLMLWGARLSELRLATKTEFDLLDNVWTVPKEHSKM-- 173

Query: 272 KQGGAIRR----AIPPLAEKIIMEQFAIWPNHTMMFPPVNTEQDRPMSANVPVDFGSKLA 327
             G  IRR     I P  EK      A+   + ++FP    + ++P+S      F +++ 
Sbjct: 174 --GNVIRRPIFDQIKPFLEK------AMTTYNDVLFP--GEDINKPISIAAANRFVNRIR 223

Query: 328 DRIEELGFPRTTNHDMRRTARNIWESMGVPYHVAETMLGHKVHTGVQSHY 377
             + +LG+ RT  HD RRT       M V  HV E MLGH++  G+ S Y
Sbjct: 224 GGM-DLGYWRT--HDFRRTLVTRLSEMNVEPHVTERMLGHEL-GGIMSVY 269