Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 417 a.a., site-specific integrase from Dickeya dianthicola ME23

 Score = 74.3 bits (181), Expect = 6e-18
 Identities = 90/387 (23%), Positives = 161/387 (41%), Gaps = 32/387 (8%)

Query: 5   ITDAWLRATNGKPYSGKTEISHRFGLGVRVSPKGKITWVYRANINGKMQRIKLGEYPAMK 64
           +TD  L+  N KP     ++S R GL V V   G +++ Y   ING+ + + +G+Y    
Sbjct: 2   LTDTKLK--NLKPEEKLYKVSDRDGLYVAVLTSGSVSFRYDYRINGRRETLVIGQYG--- 56

Query: 65  LRDAIQARESRAELVELG--FDPRKSTRSANDDSIITLNDLIDYWAE-NHARDNIKQCDA 121
            RD I   E+R EL+         +S  +A  D I  +     +    +H   +I   D+
Sbjct: 57  -RDGISLAEAREELIAAKKLLKAGQSPAAAKRDGIKKIRGAETFAVHTDHYMKHIVLADS 115

Query: 122 LLKM----FHTDITPTLGNYPAKQLE---LIDFMPVFLKAKRRVSAKHSANLMTRFKQVL 174
              M       DI P LGN    ++    + D     ++   R +A  +  +++    V 
Sbjct: 116 TRTMKESVIERDIMPVLGNKMMAEITTSMVRDLCDRIVERGGRATAVQAREIIS---SVY 172

Query: 175 SYAVRHGLLKYNVLTELKKADVGVPTTPKRSRQDEQGVKALWKAIDDISIHESNKNFLRL 234
            +A   G   +N  +++K + + +     R  Q E+ V   ++ +D ++   + K  L+L
Sbjct: 173 RHANDRGHGLFNPASDIKPSSIAMFKPRDRCLQPEE-VGIFFRTLDTVAAMATMKLALKL 231

Query: 235 MLIFANRSNELRLAKKADFDLEKRVWTVPEENNKVRKKQGGAIRRAIPPLAEKIIM---- 290
           +L+   R NE   A   + D +K  W +P +  K  +     + R    L   + M    
Sbjct: 232 VLLTMVRKNEFINATWKEVDFKKWEWVIPSDRMKGSRAHVIYLPRQAQDLMVGLQMCAGG 291

Query: 291 EQFAIWPNHTMMFPPVNTEQDRPMSANVPVDFGSKLADRIEELGFPRTTNHDMRRTARNI 350
            ++ +   ++++ P  N+  +R ++  V        A +           HDMRRTA  +
Sbjct: 292 SEYLLPGRYSVIRPLSNSALNRLITTTVE-------AAQAAGYNLEHFAVHDMRRTASTL 344

Query: 351 WESMGVPYHVAETMLGHKVHTGVQSHY 377
               G P    E  L H+   GV+S Y
Sbjct: 345 LHEAGYPSDWIEKALAHE-QRGVRSVY 370