Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 423 a.a., integrase arm-type DNA-binding domain-containing protein from Dickeya dianthicola ME23

 Score = 85.1 bits (209), Expect = 3e-21
 Identities = 98/401 (24%), Positives = 168/401 (41%), Gaps = 42/401 (10%)

Query: 3   MAITDAWLRATNGKPYSGKTEISHRFGLGVRVSPKGKITWVYRANINGKMQRIKLGEYPA 62
           M++ D  +R  N KP     ++S   GL + V P G   W +R    GK  RI LG YP 
Sbjct: 1   MSLNDTKIR--NLKPPVTPIKLSDSHGLYLHVKPTGSRLWYFRYYFFGKETRIALGAYPL 58

Query: 63  MKLRDAIQARESRAELVELGFDP------RKSTRS-ANDDSIITL--NDLIDYWAENHAR 113
           + L +A Q R+   +L+    +P       K+ RS A +   + L  +     W+ENHA 
Sbjct: 59  ISLSEARQKRDELRKLLAQNINPTQQRAAEKAARSPAKNFKTVALSWHKSNRTWSENHAA 118

Query: 114 DNIKQCDALLKMFHTDITPTLGNYPAKQLELIDFMPVFLKAKRRVSAKHSANLMTRFKQV 173
                   LL   +  I P +G+ P  +L+   F+ +    +++   + +A        +
Sbjct: 119 -------RLLASMNNHIFPIIGHLPITELKTRHFIDLLKGIEKKGLLEVAARTRQHMCNI 171

Query: 174 LSYAVRHGLLKYNVLTELKKADVGVPTTPKRSRQDEQGVKALWKAIDDISIHESNKNFLR 233
           + +AV   L+++N    L     G+   P +       ++ L + +  I  ++  +   R
Sbjct: 172 MRHAVHQELIEHNPAANLD----GIIAPPVKRHYPALLLERLPELLASIEDYKQGRELTR 227

Query: 234 ----LMLIFANRSNELRLAKKADFDLEKRVWTVP---EENNKVRKKQGGAIRRA--IPPL 284
               L L    RS+ELR A+ ++ D   ++WT+P   E    VR    GA  R   I PL
Sbjct: 228 LAVSLTLHLFIRSSELRFARWSEIDFRNKIWTIPATREAIPGVRYSGRGAKMRTPHIVPL 287

Query: 285 AEK--IIMEQFAIWPNHTMMFPPVNTEQDRPMSANVPVDFGSKLA--DRIEELGFPRTTN 340
           + +   I++Q      H  +  P +    +PM  N  V+   +L   D  +E+       
Sbjct: 288 SRQSITILKQIREISGHQELIFPGDHNPYKPMCENT-VNKALRLMGYDTKDEI-----CG 341

Query: 341 HDMRRTARNIWESMGV-PYHVAETMLGHKVHTGVQSHYLGK 380
           H  R  A +     G+      E  + H+    V++ Y+ K
Sbjct: 342 HGFRAMACSALMESGLWAQDAVERQMSHQERNSVRAAYIHK 382