Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 427 a.a., integrase arm-type DNA-binding domain-containing protein from Dickeya dianthicola ME23

 Score = 88.2 bits (217), Expect = 4e-22
 Identities = 92/402 (22%), Positives = 169/402 (42%), Gaps = 44/402 (10%)

Query: 3   MAITDAWLRATNGKPYSGKTEISHRFGLGVRVSPKGKITWVYRANINGKMQRIKLGEYPA 62
           M++ D+ +R  N K  +   ++S   GL + ++P G   W  +  IN K  R+ LG YP 
Sbjct: 1   MSLNDSKIR--NLKSLAKPFKVSDSHGLYLLINPGGSRLWYLKYRINKKESRLGLGTYPD 58

Query: 63  MKLRDAIQARESRAELVELGFDPRKS-----TRSANDDSIITL----NDLIDYWAENHAR 113
           + L DA Q R+   +L+    +P +      T S+ + +  T+    +     W+ENHA 
Sbjct: 59  VSLADARQQRDGIRKLLAQNINPAQQRSAERTTSSPEKTFKTVALSWHKSNRTWSENHA- 117

Query: 114 DNIKQCDALLKMFHTDITPTLGNYPAKQLELIDFMPVFLKAKRRVSAKHSANLMTRFKQV 173
                   LL   +  I P +G+ P  +L+   F+ +    +++   + +A        +
Sbjct: 118 ------TRLLASMNNHIFPVIGHQPVTELKPRHFIELLKGIEKKGLLEVAARTRQHLCNI 171

Query: 174 LSYAVRHGLLKYNVLTELKKADVGVPTTPKRSRQDEQGVKALWKAIDDISIHESNKNFLR 233
           + +AV   L+++N    L     G+  TP +       ++ L + +  I  +   +   R
Sbjct: 172 MRHAVHQELIEHNPAANLD----GIIATPVKRHYPALPLEQLPELLTRIEGYRQGRELTR 227

Query: 234 LMLIFA----NRSNELRLAKKADFDLEKRVWTVP---EENNKVRKKQGGAIRRA--IPPL 284
           L ++       RS+ELR A+ ++ D    +WT+P   E    VR    GA  R   I PL
Sbjct: 228 LAVLLTLHLFIRSSELRFARWSEIDFRNHIWTIPATREAIPGVRYSGRGAKMRTPHIVPL 287

Query: 285 AEK--IIMEQFAIWPNHTMMFPPVNTEQDRPMSANVPVDFGSKLADRIEELGFPRTTN-- 340
           + +   I++Q      H ++  P +    +PM  N        +   +  +G+    N  
Sbjct: 288 SRQAIAILKQIREISGHQVLVFPGDHNPYKPMCENT-------VNKALRLMGYDTQNNIC 340

Query: 341 -HDMRRTARNIWESMGV-PYHVAETMLGHKVHTGVQSHYLGK 380
            H  R  A +     G+      E  + H+    V++ Y+ K
Sbjct: 341 GHGFRAMACSALMESGLWSQDAVERQMSHQERNSVRAAYIQK 382