Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 427 a.a., integrase arm-type DNA-binding domain-containing protein from Dickeya dianthicola ME23

 Score = 88.6 bits (218), Expect = 3e-22
 Identities = 81/335 (24%), Positives = 143/335 (42%), Gaps = 33/335 (9%)

Query: 3   MAITDAWLRATNGKPYSGKTEISHRFGLGVRVSPKGKITWVYRANINGKMQRIKLGEYPA 62
           M++ D+ +R  N KP +   ++S   GL + ++P G   W  +  IN K  R+ LG YP 
Sbjct: 1   MSLNDSKIR--NLKPSAKPFKVSDSHGLYLLINPGGSRLWYLKYRINRKESRLGLGTYPD 58

Query: 63  MKLRDAIQARESRAELVELGFDP---------RKSTRSANDDSIITLNDLIDYWAENHAR 113
           + L DA Q R+   +L+    +P          +S   +  D  +  +     W+ENHA 
Sbjct: 59  VSLADARQQRDGIRKLLAQNINPAHQRAAEKVSRSPEKSFRDVALDWHKSNRTWSENHA- 117

Query: 114 DNIKQCDALLKMFHTDITPTLGNYPAKQLELIDFMPVFLKAKRRVSAKHSANLMTRFKQV 173
                   LL   +  + P +G+ P  +L+   F+ +    +++   + +A        +
Sbjct: 118 ------TRLLASMNNHLFPVIGHLPVTELKARHFIDLLKGIEKKGLLEVAARTRQHLCNI 171

Query: 174 LSYAVRHGLLKYNVLTELKKADVGVPTTPKRSRQDEQGVKALWKAIDDISIHESNKNFLR 233
           + YAV   L+++N    L     G+   P +       ++ L + +  I  ++  +   R
Sbjct: 172 MRYAVHQELIEHNPAANLD----GIIAPPVKRHYPALQLERLPELLASIEDYKQGRELTR 227

Query: 234 ----LMLIFANRSNELRLAKKADFDLEKRVWTVP---EENNKVRKKQGGAIRRA--IPPL 284
               L L    RS+ELR A+ ++ D    +WT+P   E    VR    GA  R   I PL
Sbjct: 228 LAVSLTLHLFIRSSELRFARWSEIDFRNHIWTIPATREAIPGVRYSGRGAKMRTPHIVPL 287

Query: 285 AEK--IIMEQFAIWPNHTMMFPPVNTEQDRPMSAN 317
           + +   I+ Q      H ++  P +    +PM  N
Sbjct: 288 SRQAIAILRQIQEISGHQVLIFPGDHNPYKPMCEN 322