Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 422 a.a., tyrosine-type recombinase/integrase from Dickeya dianthicola ME23

 Score = 97.4 bits (241), Expect = 6e-25
 Identities = 96/395 (24%), Positives = 166/395 (42%), Gaps = 28/395 (7%)

Query: 3   MAITDAWLRATNGKPYSGKTEISHRFGLGVRVSPKGKITWVYRANINGKMQRIKLGEYPA 62
           MA+TD   R    KP     +++   GL + VSP G   W  +   +GK  RI  G YP 
Sbjct: 1   MALTDVVARTA--KPREKAYKLADAHGLYLLVSPNGSKRWYLKYRFDGKESRIAFGAYPL 58

Query: 63  MKLRDAIQARESRAELVELGFDP---RKSTRSANDDSIITLNDLIDYWAENHARDNIKQC 119
           + L  A + R+    L+  G  P   R+  +    D++ T   +   W  N +++   Q 
Sbjct: 59  ISLAKAREKRDEVRLLLSEGIHPTEKREEEKEQAQDALNTFEKVARDWHRNISQNRWSQT 118

Query: 120 DA--LLKMFHTDITPTLGNYPAKQLELIDFMPVFLKAKRRVSAKHSANLMTRFKQVLSYA 177
            A  + +    +I P +G      L+  D +      ++      ++ L  R   ++ YA
Sbjct: 119 HAGRVWRDMERNILPAIGQRHIADLKTKDLLEPLKAVEQNGHLDLASRLRQRITDIMRYA 178

Query: 178 VRHGLLKYNVLTELKKADVGVPTTPKRSRQDEQGVKALWKAIDDISIHESNKNFLRLMLI 237
           V++ L++ N   +L  A +  P    R       +      I+        +  L+L L 
Sbjct: 179 VQNDLIERNPAQDLTGA-IAAPKATHRPALKLDKLPDFLARIERYKGRALTRLALKLTLC 237

Query: 238 FANRSNELRLAKKADFDLEKRVWTVPEENNK---VRKKQGGAIRRA--IPPLAEK---II 289
              RS+ELR A+  + D ++ +WT+P E      V+  Q GA  R+  + PL+ +   ++
Sbjct: 238 VFIRSSELRFARWPEIDFKRAMWTIPPEREAIPGVKHSQRGAKMRSEHLVPLSRQALALL 297

Query: 290 MEQFAIWPNHTMMFPPVNTEQDRPMSANVPVDFGSKLADRIEELGFPRTT---NHDMRRT 346
            E  AI   H ++FP  +    +PMS N        +   +  +G+  TT    H  R  
Sbjct: 298 EEIKAISGVHELIFPG-DHRPTKPMSENT-------INSALRTMGYDTTTEVCGHGFRTM 349

Query: 347 ARN-IWESMGVPYHVAETMLGHKVHTGVQSHYLGK 380
           A + + ES        E  + H+   GV++ Y+ K
Sbjct: 350 ACSALVESGQWSRDAVERQMSHQERNGVRAAYIHK 384