Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 416 a.a., tyrosine-type recombinase/integrase from Dickeya dadantii 3937

 Score = 77.4 bits (189), Expect = 7e-19
 Identities = 80/362 (22%), Positives = 137/362 (37%), Gaps = 24/362 (6%)

Query: 16  KPYSGKTEISHRFGLGVRVSPKGKITW---VYRANINGKMQRIKLGEYPAMKLRDAIQAR 72
           KP   +  +    GL + V P G   W    YR +   K   I  G +PA+ L +A Q R
Sbjct: 17  KPAEKEYTLQDGDGLYLLVKPSGSKIWRFNYYRPDTK-KRALISFGAFPAVSLAEARQRR 75

Query: 73  ESRAELVELGFDPR-KSTRSANDDSIITLNDLIDYWAENHARDNIKQCDA-----LLKMF 126
           ES   L+  G DP+    +    +  I+LN      A+ +     +Q  A     + +  
Sbjct: 76  ESAKALISKGIDPQFHQQQQREQEQAISLNTFAKVAADWYEVKKSQQLAANTIKDIWRSL 135

Query: 127 HTDITPTLGNYPAKQLELIDFMPVFLKAKRRVSAKHSANLMTRFKQVLSYAVRHGLLKYN 186
              + P + N P  QL    F+      +     +    +  R  +V+ YAV  GL+  N
Sbjct: 136 EKYVFPFIANQPISQLTARHFITALEPIQASGKLETVKRVSQRINEVMDYAVNSGLIPAN 195

Query: 187 VLTELKKADVGVPTTPKRSRQDEQGVKALWKAIDDISIHESNKNFLRLMLIFANRSNELR 246
              +++KA    P          + +  L K +   SI    +  +   L+  +R  E  
Sbjct: 196 PAAKIRKA-FQTPVKTHMPTIRPEALPGLMKTLSVASIELQTRLLIEWQLLTVSRPAEAA 254

Query: 247 LAKKADFDLEKRVWTVPEENNKVRKKQGGAIRRAIPPLAEKIIMEQFAIWPNHTMMFPPV 306
             + ++ DL +  WT+P    K+R++        +PP A  I+     I  +   +FP  
Sbjct: 255 ETRWSEIDLMQNTWTIPAGRMKMRREH----VIPLPPQALAILDAMKPISGHREYLFPSA 310

Query: 307 NTEQDRPMSANVPVDFGSKLADRIEELGFPRT-TNHDMRRTARNIWESMGVPYHVAETML 365
             +  +PM++             +  +G+     +H +R          G P  V E  L
Sbjct: 311 K-DPKQPMNSQT-------ANAALRRMGYKGVLVSHGLRAIFSTAANEAGFPPDVIEAAL 362

Query: 366 GH 367
            H
Sbjct: 363 AH 364