Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 419 a.a., tyrosine-type recombinase/integrase from Dickeya dadantii 3937

 Score = 91.3 bits (225), Expect = 5e-23
 Identities = 74/327 (22%), Positives = 146/327 (44%), Gaps = 18/327 (5%)

Query: 3   MAITDAWLRATNGKPYSGKTEISHRFGLGVRVSPKGKITWVYRANINGKMQRIKLGEYPA 62
           M +TD  +R  N KP     ++S   GL + + P G   W  +    GK +++  G YP 
Sbjct: 1   MPLTDTAIR--NAKPLDKPYKLSDAQGLYLLIKPNGSKLWHLKYRFGGKEKKLAFGAYPT 58

Query: 63  MKLRDAIQARESRAELVELGFDP--RKSTRSANDDSIITLNDLIDYWAENHARDNIKQCD 120
           + L +A + RE    ++  G DP  +K        +  T   +   W   + R +     
Sbjct: 59  VSLANARKLREEARTILSAGDDPGVKKQHDKQAKKNGNTFEAIARQWVAANIRWSEAHAA 118

Query: 121 ALLKMFHTDITPTLGNYPAKQLELIDFMPVFLKAKRRVSAKHSANLMTRFKQVLSYAVRH 180
            +L+     + P +GN     L+  + +     A+++   + +A +  R   ++ YAV+ 
Sbjct: 119 KVLRSLELHVFPLIGNVLVTDLKTANLLIPLRVAEKKGCLETAARIQQRTTVIMRYAVQE 178

Query: 181 GLLKYNVLTELKKADVGVPTTPKRSRQDEQGVKALWKAIDDISIHES---NKNFLRLMLI 237
           GL+  N   +L     G  T P ++      ++ L + ++ I  +      +  ++L L+
Sbjct: 179 GLIASNPANDL----CGAITPPPKNHYPALPLERLPELLERIEGYSGRLLTRLAVQLNLL 234

Query: 238 FANRSNELRLAKKADFDLEKRVWTVPEENNK---VRKKQGGAIRRA--IPPLAEK--IIM 290
              RS+ELR A+  + DL+  +WT+P +      VR  + GA  +   + PL+++   ++
Sbjct: 235 IFIRSSELRFARWTEIDLDNAMWTLPAQREPITGVRHSERGAKMKTPHLVPLSKQAVTVL 294

Query: 291 EQFAIWPNHTMMFPPVNTEQDRPMSAN 317
           +Q  +   +  +  P + +  +PMS N
Sbjct: 295 KQLKLLSGNGDLLFPGDHDARKPMSEN 321