Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 406 a.a., site-specific integrase from Dickeya dadantii 3937

 Score =  127 bits (318), Expect = 7e-34
 Identities = 103/380 (27%), Positives = 169/380 (44%), Gaps = 24/380 (6%)

Query: 5   ITDAWLRATNGKPYSGKTEISHRFGLGVRVSPKGKITWVYRANINGKM---QRIKLGEYP 61
           ++D  LR   G+   G +  +   GL V+VS  G +TW +   + G+    QRIKLG YP
Sbjct: 8   LSDTSLRKMMGRESPGDSFYADGDGLSVKVSKIGVMTWYFTFRVGGRSAAPQRIKLGNYP 67

Query: 62  AMKLRDAIQARES-RAELVELGFDPRKSTRSANDDSI--ITLNDLIDYWAENHARDNIKQ 118
            + L+ A + RE  RA L E G +PR     A  +S+  IT+ + ++YW   +A      
Sbjct: 68  DLSLKAAREKREQCRAWLAE-GKNPRHQLSIATQESLKPITVKEALEYWIREYATHKRAN 126

Query: 119 CDALLKMFHTDITPTLGNYPAKQLELIDFMPVFLKAKRRVSAKHSANLMTRFKQVLSYAV 178
            +  ++     I P +G+YP    E   ++  F + +       +  L+   KQ L +  
Sbjct: 127 VNKHIEQLKKHIYPYIGDYPLSMCETRHWLECFSRVRSEAPVA-AGYLLQMCKQALKFCR 185

Query: 179 RHGLLKYNVLTELKKADVGVPTTPKRSRQDEQGVKALWKAIDDISIHESNKNFLRLMLIF 238
            H     N L++L   DVG     +      Q +  +W+            + L L+++F
Sbjct: 186 VHRYADSNALSDLTIDDVGSKQNKRDRVHSRQELADIWRESTGQKFKPYYASLLHLLVVF 245

Query: 239 ANRSNELRLAKKADFDLEKRVWTVPEENNKVRKKQGGAIRRAIPPLAEKIIMEQFAIWPN 298
             R+ ELR +  +++DL+  VWTVP E++    K G  I R IP      ++       +
Sbjct: 246 GCRTQELRFSLISEWDLDDWVWTVPREHS----KGGEKILRPIPEAIRPFVVALCNQHKD 301

Query: 299 HTMMFPPVNTEQDRPMSANVPVDFGSKLADRIEELGFPRT-TNHDMRRTARNIWESMGVP 357
             ++   +        S+     +G  +  R   LG     T HD+RRT      +MG+ 
Sbjct: 302 SGLLLGEIK-------SSEAVSQWGRGIYKR---LGHSEPWTLHDLRRTFSTTLNNMGIA 351

Query: 358 YHVAETMLGHKVHTGVQSHY 377
            HV E +LGH +  GV + Y
Sbjct: 352 PHVVEQLLGHTL-GGVMAVY 370