Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 396 a.a., putative integrase from Escherichia coli BL21

 Score = 81.6 bits (200), Expect = 3e-20
 Identities = 69/294 (23%), Positives = 123/294 (41%), Gaps = 12/294 (4%)

Query: 34  VSPKGKITWVYRANINGKMQRIKLGEYPAMKLRDAIQARESRAELVELGFDP--RKSTRS 91
           V P G   W  +    GK + + LG YP + L DA   R+   +L+  G DP  +K    
Sbjct: 5   VHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDETRKLLANGVDPGDKKKNDK 64

Query: 92  ANDDSIITLNDLIDYWAENHARDNIKQCDALLKMFHTDITPTLGNYPAKQLELIDFMPVF 151
                  T  ++   W   + + +      +LK    ++   LG     +L+  D +   
Sbjct: 65  VEQSKARTFKEVAIEWHGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTRDLLAPI 124

Query: 152 LKAKRRVSAKHSANLMTRFKQVLSYAVRHGLLKYNVLTELKKADVGVPTTPKRSRQDEQG 211
              +     + +A L  R   ++ YAV+ GL+ YN   E+  A V       R   + + 
Sbjct: 125 KAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGA-VASCNRQHRPALELKR 183

Query: 212 VKALWKAIDDISIHESNKNFLRLMLIFANRSNELRLAKKADFDLEKRVWTVPEENNKV-- 269
           +  L   ID  +     +  + L L+   RS+ELR A+ ++ D E  +WT+P E   +  
Sbjct: 184 IPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPEREPIPG 243

Query: 270 --RKKQGGAIRRA-IPPLAEK---IIMEQFAIWPNHTMMFPPVNTEQDRPMSAN 317
                +G  +R   + PL+ +   I+ +    +  H ++F   + +  +PMS N
Sbjct: 244 VKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIG-DHDSHKPMSEN 296