Pairwise Alignments

Query, 385 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 394 a.a., Int from Escherichia coli BL21

 Score =  101 bits (251), Expect = 4e-26
 Identities = 93/387 (24%), Positives = 170/387 (43%), Gaps = 33/387 (8%)

Query: 3   MAITDAWLRATNGKPYSGKTEISHRFGLGVRVSPKGKITWVYRANINGKMQRIKLGEYPA 62
           MA+TD  ++    KP     +++   G+ + ++  G   W  +    GK + + +G YP 
Sbjct: 1   MALTD--IKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPD 58

Query: 63  MKLRDAIQARESRAELVELGFDP---RKSTRSANDDSI-ITLNDLIDYWAENHA-RDNIK 117
           + L DA + R    +L+  G DP   +K  + A   S+  T   +   W ++ A R +++
Sbjct: 59  VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLQNTFEAIAREWHQSKADRWSLR 118

Query: 118 QCDALLKMFHTDITPTLGNYPAKQLELIDFMPVFLKAKRRVSAKHSANLMTRFKQVLSYA 177
             D ++  F  DI P +G  P  +++ ++ +    K ++R + +    +  R  +V  YA
Sbjct: 119 YRDEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYA 178

Query: 178 VRHGLLKYNVLTELKKADVGVPTTPKRSRQDEQGVKALWKAIDDISIHESN---KNFLRL 234
           +  G   YN   +L  A      TPK+          L   ++D++ +  +   K   ++
Sbjct: 179 IVTGRADYNPAPDLASA----LATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQI 234

Query: 235 MLIFANRSNELRLAKKADFDLEKRVWTVPEENNKVRKKQGGAIRRAIPPLAEKIIM---E 291
           +++   R+ ELR A+  D D E ++W +P E  K++       R  I PL+E++IM   +
Sbjct: 235 IMLTGVRTQELRFARWEDIDFETKLWEIPAEVMKMK-------RPHIVPLSEQVIMLFKQ 287

Query: 292 QFAIWPNHTMMFPPVNTEQDRPMSANVPVDFGSKLADRIEELGFP-RTTNHDMRRTARNI 350
              I  +H ++F   N +  +P+S          +   IE LG+  R T H  R T   I
Sbjct: 288 LEPISKHHPLVFIGRN-DPRKPISK-------ESINQVIELLGYKGRLTGHGFRHTMSTI 339

Query: 351 WESMGVPYHVAETMLGHKVHTGVQSHY 377
               G      E  L H     ++  Y
Sbjct: 340 LHEQGFNSAWIEMQLAHVDKNSIRGTY 366